Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05130 102 / 2e-26 DNA/RNA helicase protein (.1) AT5G43530 90 / 4e-22 Helicase protein with RING/U-box domain (.1) AT1G05120 84 / 4e-20 Helicase protein with RING/U-box domain (.1) AT1G02670 83 / 1e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22750 83 / 1e-19 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G61140 79 / 2e-18 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT3G20010 79 / 3e-18 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 79 / 3e-18 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT3G16600 78 / 5e-18 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G50410 76 / 3e-17 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033800 [exp] 176 / 1e-52 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 131 / 9e-37 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 129 / 8e-36 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 123 / 7e-34 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 122 / 1e-33 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 86 / 9e-21 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.014G154600 [exp] 86 / 1e-20 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G189400 [exp] 84 / 6e-20 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.004G037700 [exp] 81 / 8e-19 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027296 [exp] 111 / 2e-30 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10039001 [exp] 112 / 4e-30 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10030044 [exp] 89 / 9e-22 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10041156 [exp] 87 / 7e-21 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10043365 [exp] 86 / 2e-20 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10011211 [exp] 84 / 4e-20 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018465 [exp] 84 / 7e-20 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10019523 [exp] 81 / 9e-20 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1) Lus10041008 [exp] 79 / 3e-18 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 72 / 8e-16 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G033450.1 pacid=42809798 polypeptide=Potri.016G033450.1.p locus=Potri.016G033450 ID=Potri.016G033450.1.v4.1 annot-version=v4.1 ATGAGCAAATATCAGTACACCCCCGGTCGGATTTTCCCAACACTGCTTGCGAACGTTAAAGTTTCAGGAGCCGGCATAAACCTCACAGCTGCTTCCGAAG TCTACTTAATGGAGCCGTGGTGGAACTCAGAATTTGAGGAACAGGCAATAGACCGTGTTCACCAATATGGACAGGAGAAGAATGTAATAATTGTTAGATT GATTGTTCAAGATAGCATTGAAGAAAGGATATTGATGATGCAGGAAAGGAAGAAACAGGCAATTGAAGCTTTCGGCATGCAGGGACCCAAGGAACGACGC GAGGTTAGCTTAGAAGACCTCTGTAGCCTCTTATCCTTGGAATAA
AA sequence Show only first row Show all	>Potri.016G033450.1 pacid=42809798 polypeptide=Potri.016G033450.1.p locus=Potri.016G033450 ID=Potri.016G033450.1.v4.1 annot-version=v4.1 MSKYQYTPGRIFPTLLANVKVSGAGINLTAASEVYLMEPWWNSEFEEQAIDRVHQYGQEKNVIIVRLIVQDSIEERILMMQERKKQAIEAFGMQGPKERR EVSLEDLCSLLSLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033450 [exp]	0	1
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.014G166600 [exp]	13.92	0.9858	HCQL4
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155300 [exp]	16.52	0.9857
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008404 [exp]	20.00	0.9845
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008906 [exp]	22.36	0.9844
AT4G18970			GDSL-like Lipase/Acylhydrolase...		Potri.019G008904 [exp]	24.61	0.9844
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.019G014454 [exp]	26.45	0.9844
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008902 [exp]	28.28	0.9844
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G005402 [exp]	30.00	0.9844
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212300 [exp]	31.14	0.9843
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G005400 [exp]	34.64	0.9842

Compare expression of checked genes

Potri.016G033450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.