Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05130 709 / 0 DNA/RNA helicase protein (.1) AT5G22750 322 / 2e-95 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 320 / 4e-93 Helicase protein with RING/U-box domain (.1) AT1G11100 290 / 6e-83 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G61140 285 / 2e-81 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT3G16600 217 / 2e-60 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G50410 204 / 3e-54 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G02670 189 / 1e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G20010 189 / 2e-49 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 181 / 4e-47 Helicase protein with RING/U-box domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034000 [exp] 1378 / 0 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 1157 / 0 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 1022 / 0 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 837 / 0 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.004G189400 [exp] 312 / 9e-92 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 294 / 1e-85 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.007G000700 [exp] 241 / 2e-66 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.014G154600 [exp] 183 / 9e-48 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G037700 [exp] 173 / 5e-44 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039001 [exp] 739 / 0 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10027296 [exp] 392 / 1e-128 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10043365 [exp] 325 / 6e-96 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 274 / 1e-77 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10041008 [exp] 244 / 8e-68 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 238 / 1e-64 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10011211 [exp] 215 / 1e-57 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10030044 [exp] 184 / 1e-47 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10002974 [exp] 127 / 1e-29 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10018465 [exp] 109 / 4e-24 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08797 [poplar] [flax] HIRAN HIRAN domain
Representative CDS sequence Show only first row Show all	>Potri.016G033700.1 pacid=42809098 polypeptide=Potri.016G033700.1.p locus=Potri.016G033700 ID=Potri.016G033700.1.v4.1 annot-version=v4.1 ATGGAAGAAGAAGAAGAATTTCAACAAGGTCACCAAAGCCCAGTACTTTCATTTACTTCTGATGATGGTCAGGATTCTTCACAAGAAGAAGGTCTAGAAG ATCCAATACCAAGACTACTTGCCATGAGTCTTGATGCCTGGAGAGATCCATCTACTTTTCAAGATTGGCTATCTTTTGGTTCACAACCAGTCCTGACTGA AACCACCCTTGTTGGTTCTTTTACCACCACTATTGTAGGCCACAGTGGTGCAAAATTCAATGAGCATGAATTGCTTGAATTTGTCCGTTATCAACAATGC CCTTCTGATAAGAATGCTATAAAGGTTTTAAATTCTAGTTCTAGAGAAGTGGGCTACCTTTGTACTTCAGTTGCTATGGTTTTATCTCCTTTAGTTGATA TTCTAAAAATTAATCTTGAAGGTGAGGTGATTTGTTCAAGATTTAAATATGATACGTCTATTCCTTGTGTAGTTACAATTTTTGCAGAGTCAGCGGTTGC ACAGAATGCTAAAGATTGGATTTTACAACACGGGTTGCGTTTATGTGATCAACCTGGTACAAGTCTCAGGTCATATGAGGGTATGGGGGTTCAAGAAAAG GGTAGGATAGAGAAATTGGGGAGTTTGGAACCACCAAAGAATGTGATTAAAGCTAAACTTCTTGATCATCAAAAGGAGGGCCTATGGTGGTTGGTGACTA AAGAGAAGTCTGATGAGTTGCCCCCTTTTTGGGAGGTGAAAGATGGGTCGTATCTGAATGTTTTGACAAGGCATCAAACGGATAGGAGACCAGAGCCTTT GCATGGTGGGATTTTTTCTGATCATTATGGATCAGGAAAGACTCTGACTTTGCTTTCTTTAATTGCTTTTGATAAGGTTGGCAATGTTACTGAAGGAACA GGAGAGGAGGACAGGGTAGTGTATGTTTCTAGCGGGAAGAAGAGGAAGGGGGGTGGCATGGTGAGTGAAAAGGGTACTGGAGAACAAAAAATGCATAGCC TTTTGGATAGTAATATAAAAGAAAGTTCTGTGCGCATGGCCGGGGAGTCTTCTAGTGCTTTGGTTGCTAAGAAAACACTAGTCGTGTGCCCTTCTGCTGT GTGTTCGACATGGGAAAACCAACTGCAGGAGCACACTCAAAATGGTTCACTCAAGCTATACAAGTATTATGGGGATAACAGGACGAAGGATGCAGAGGAG CTTATGAAATATGATATAGTGTTGACCACATATAGTACCTTGGTTGCTGAAGGCTGTGAACCCACACGGTGCCCTTTGATGAAGATCGAGTGGTGGCGAG TCATTTTGGATGAGGCTCACGTGATTAAGAATGCAAATGCAAAGCAGATTCGGGATTTTAGTAAATTGACCGCTAGGAGGAGGTGGGCTGTTACAGGAGC ACCCATCCAGAATGGATCTTTCGATTTATTTTCCCTGATGGTCTTTTTCCGGTTAGATCCACTCTCCACAGAATGCTACTGGCAACGACTGTTTCAGAAA CCACTTGCTAATGGAGATGAGAAAGGGTTCTCCCGGCTGCAGAAATTAATGGCAACAATTTCTTTGCGGAGAATAAAAGACAAGGATTTAGTTGGATTGC CATCCAAAACTGTAGAGACAGTTTCCTTTGAACTTTCTGGAGAAGAACGTGTACTGTATGATCAGATGGAAGCAGATTCCAAGGATGTTATTGGATGTTT TATTACCGCTGATATTCTACACAGCCACTATGTATGTGTGCTTTTTTCAGTTATACAGCTTCGCCAGTTATGTAATGATTCGGCCTTATGCTCTATGGAT CTCAGATCATTGCTCCCTTCTGACAATATTGGAGATGCATCCAAACATCCGGAATTGCTTCGAAAAATGATTGATGGGCTTCAAGATGGTGAAGATATTG TCTGTTCGGTTTGCCTTGATCCACCAACTGATGCTACAATCACAATCTGTGAGCATATATTTTGCAAAAAATGTATTTGCCATCACCTGCAACACAAAGA AACCGAACAAACCTGCCCAAATTGTCGGCGTCGTCTTTCTCTGCCTGACCTGTTCTCAGCCCCTCCAGAATCTTCCAATCCTGAAAACCCTAAAAAACTG TCAAGAACAACCCCTTCCAAAGTCTCAGCTCTCATAAAACTCTTGAAGGAATCTAGGGTTGTAAACTCAATCAGTAAATCAGTAGTTTTTTCACTGTTTG ATAAGATGTTGGCATTAATGGAAGAGGCAGTGAAAGATGCTGGCTTCAATACATTGCGGTTGGATGCATCAACAGATGAAATAAGGCAAGCTGAAATAAT CAAGGAATTTGGATCAGCAGGAGCAGACACGGTTCTGCTTGCGAGTCTCAAGACTTCAGGAACCGGCATAAACCTCACAGCTGCTTCCAAAGTCTACTTG TTGGAGCCATGGTGGAATTCAGCGGCTGAGGAACAGGCAATAAACCGTGTTCATCAATACGGACAGAAGGAGAATGTAAGAATTGTTAGATTGATTGCTA AAAATAGCATTGAAGAAAGGATATTGGAGATGCAGGAAAGGAAGAAAGCAGCGAATGAAGCTTTTGGAAGGAAACGGCCATATGAACAACACGAGGCCAG CATAGATGATCTCTGTCGCCTCTTCTTCTGGTGA
AA sequence Show only first row Show all	>Potri.016G033700.1 pacid=42809098 polypeptide=Potri.016G033700.1.p locus=Potri.016G033700 ID=Potri.016G033700.1.v4.1 annot-version=v4.1 MEEEEEFQQGHQSPVLSFTSDDGQDSSQEEGLEDPIPRLLAMSLDAWRDPSTFQDWLSFGSQPVLTETTLVGSFTTTIVGHSGAKFNEHELLEFVRYQQC PSDKNAIKVLNSSSREVGYLCTSVAMVLSPLVDILKINLEGEVICSRFKYDTSIPCVVTIFAESAVAQNAKDWILQHGLRLCDQPGTSLRSYEGMGVQEK GRIEKLGSLEPPKNVIKAKLLDHQKEGLWWLVTKEKSDELPPFWEVKDGSYLNVLTRHQTDRRPEPLHGGIFSDHYGSGKTLTLLSLIAFDKVGNVTEGT GEEDRVVYVSSGKKRKGGGMVSEKGTGEQKMHSLLDSNIKESSVRMAGESSSALVAKKTLVVCPSAVCSTWENQLQEHTQNGSLKLYKYYGDNRTKDAEE LMKYDIVLTTYSTLVAEGCEPTRCPLMKIEWWRVILDEAHVIKNANAKQIRDFSKLTARRRWAVTGAPIQNGSFDLFSLMVFFRLDPLSTECYWQRLFQK PLANGDEKGFSRLQKLMATISLRRIKDKDLVGLPSKTVETVSFELSGEERVLYDQMEADSKDVIGCFITADILHSHYVCVLFSVIQLRQLCNDSALCSMD LRSLLPSDNIGDASKHPELLRKMIDGLQDGEDIVCSVCLDPPTDATITICEHIFCKKCICHHLQHKETEQTCPNCRRRLSLPDLFSAPPESSNPENPKKL SRTTPSKVSALIKLLKESRVVNSISKSVVFSLFDKMLALMEEAVKDAGFNTLRLDASTDEIRQAEIIKEFGSAGADTVLLASLKTSGTGINLTAASKVYL LEPWWNSAAEEQAINRVHQYGQKENVRIVRLIAKNSIEERILEMQERKKAANEAFGRKRPYEQHEASIDDLCRLFFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033700 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.002G080700 [exp]	1.41	0.9597
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.018G112400 [exp]	2.00	0.9559	Pt-AHA6.3
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	11.66	0.8985
AT1G68780			RNI-like superfamily protein (...		Potri.008G114700 [exp]	18.65	0.9217
					Potri.003G143250 [exp]	22.18	0.9185
					Potri.001G112250 [exp]	27.92	0.9005
					Potri.002G193400 [exp]	29.10	0.8775
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	29.18	0.9171
AT2G20560			DNAJ heat shock family protein...		Potri.007G136266 [exp]	30.33	0.9108
AT3G52105			unknown protein		Potri.009G061800 [exp]	35.88	0.9000

Compare expression of checked genes

Potri.016G033700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.