Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05130 649 / 0 DNA/RNA helicase protein (.1) AT5G43530 309 / 1e-89 Helicase protein with RING/U-box domain (.1) AT5G22750 301 / 8e-88 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G61140 275 / 4e-78 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT3G16600 227 / 4e-64 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 227 / 9e-62 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G50410 187 / 6e-49 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G02670 183 / 2e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G20010 182 / 3e-47 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 172 / 2e-44 Helicase protein with RING/U-box domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034000 [exp] 983 / 0 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 972 / 0 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 945 / 0 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 808 / 0 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.004G189400 [exp] 308 / 2e-90 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 300 / 3e-88 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.007G000700 [exp] 261 / 5e-74 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.004G037700 [exp] 197 / 8e-52 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.016G033450 [exp] 175 / 2e-51 AT5G05130 100 / 5e-26 DNA/RNA helicase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039001 [exp] 673 / 0 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10027296 [exp] 320 / 4e-101 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10043365 [exp] 319 / 5e-94 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10011211 [exp] 285 / 2e-81 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 266 / 7e-76 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041156 [exp] 253 / 1e-70 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10013452 [exp] 244 / 3e-67 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10030044 [exp] 172 / 6e-44 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10018465 [exp] 163 / 4e-41 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10012867 [exp] 105 / 1e-22 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08797 [poplar] [flax] HIRAN HIRAN domain CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.016G033800.1 pacid=42810449 polypeptide=Potri.016G033800.1.p locus=Potri.016G033800 ID=Potri.016G033800.1.v4.1 annot-version=v4.1 ATGGAAGCAGAATTAAAGGAAGAACAAGAAGACGCACTGGGCCTATACATGAATCTTTATGCTCGTCCAGATTCTTCTTCGTTTGAAGATTGGAAATATT CTTCTTCACAACAAATCCGGTATAAAACCAGCCATGTTTGTTCTTTTATAACCCATATTGTGGGCCTCAGAAACCACCCTGCTATAGTATTCAGTGACCA TGAATTGATTACACTTGTACGTTATCAACAATGCCCTCGTGATAAGTATGCTATAAAGGTTTTCAATTCTACTTCTATGGAGGTGGGTTACCTTCATGAT CAAGCTTCGGCTGCTTTATCTCCTTTAATTGATGCTCAAATGATTAATCTTGAAGGTGAGGTGACTGATTCAAGAACTGGAGATGTTAAGTACTCTGTTC CTTGTCTCGTTAGAGTCTTTTCAAAGTCAACTGACCTAGAGAATGTTACACAATCGATTTTTGGAAATACTTTGAGCTTAACTGGTGAGCCTCGTACAAA TCCCGAGACAAATGAGGGTAAGGGGGGTAAAGAAAAGGGTAGGATAGAGAAATTGGGGACTTTAGAGCCACCAAAGGAGGTGATTAAAGCTAAACTTCTT GATCATCAAAAGGTGGGTTTGTGGTGGTTGGTGAATAAAGAAAACTCTGATGAGTTGCCCCCTTTTTGGGAGATGAAAGATGGGCTGTATGTGAATGTTT TAACAAGGCATCGAACGAATAGGAAACCGGAGCCTTTGCATGGCGGGATTTTTGCTGATGATTATGGAACGGGCAAAACTCTAACTTTGCTTTCTTTGAT TGCTTTTGATAAGGTTGGCAATGTCCCTGAAGGAACAGGTGAGGAGGATGAGGGAGTGTCTGTTTGTAGTTGTAAGAAGAGAGGAAGGGTGAGTGAAAAG GGTACTGGAGAACCAAATACACATACCCTTTTGGATAGCAATATAAAAGAAAGTTCTGGGGGCATGGCTGATAAGTCTTCTAGTGCTTCGGTGGCTAAGC AAACATTAATTGTGTGCCCGTCTTCTGTGTGTTCAACATGGAAAAACCAACTACTGGAGCACACAGAAAAAGGATCGCTCAAGCTACACAAGTATTATGG GGATAGCAAGATTAAGGATGTTGAGGAGCTTAAGAAATACGATATAGTATTGACCACGTATGGTGCCTTCGCTAATGAGTCCTTTGAAAGGTGGTGCCCT TTGTTGAAGATCGAGTGGTGGCGAGTCATTTTGGATGAGGCTGATGTGATTAAGAATGCAAATGCCATGCAAAGTAAGGCAGTCTCTGGTTTGACCGCTA GGAGGAGGTGGGCTGTTACAGGAGCACCCATCCAGAATGGATCGTTTGATTTATTTGCCTTGATTGCATTTTTGCGATTAGATCCACTCTCTAAAAAAAG CTACTGGCAAAGCCTGTTGGAGAGGCCACTTGCTAAGAAGGATGGGAATGGATTCTCGCGACTGCAGGATTTAATGGCGGCCATTTCTTTGCGGAGAACG AAAGACAGGGTTTTAGTTGGCCGATTACGATCAAAAACTGTAGAGACAGTTCGCTTTAAAATTTATGGAGACGAACGTGAGCTGTATGATCAGATGGCAG CAGAATCCAAGAAAGTTGTCCGCAAACTCATTGCTACTGGTAGACTAAACAGAAGCTATGCATCTATACGCGGTGCAGTCATACGACTTCGCCAGATGTG TAATGATGCAACCCCGTTCTCGTTGTATCTCAAATCATTGCTACCTTCTGACGATATAGGAGATGCATCAGAACACCCAGAATTTCTCCGACAGTTGATT GATGTGCTTCGCAAAGATGAAGATTTTGACTGTGCAATTTGTTATTGTCCACCAACCGATGCTGTGATCACAATATGTAAACATGTATTTTGCAAAAGAT GCATTCGGACTTGCCTGCAGAGAACCAGAACCAGCTGCCCAATTTGTCGTGGTCGTCTTTCTATGTCTGACCTGTTCTCAGCTCCTCCTGAATCTTCCGA TCCTGAAGATCCTAGAAAATCTACAGCAATAATTCCTTCCAAAGTCTCAACTCTCATAAAACTCCTGAAGGAATCTAGGGACGTGAGACCAGCCAGTAAA TCAGTGGTTTTTACAATATTCCAGAAGATGTTGGTACTACTTGAAGCGCCACTGAAAGACGCTGGCTTCAATGTATTGCGGTTGGATGCATTAATAGATG CTAGAAGGAGAGGTGGAATAATCAAGAAATTTCGATCAGCAGGACAAAACACAGTTCTGCTTGCGAACGTTAAAGTTTCAGGAGCCGGCATAAACCTCAC AGCTGCTTCCGAAGTCTACTTGTTGGAGCCGTGGTGGAACTCAGAATTGGAGGAACAGGCAATAGACCGTGTTCACCAATATGGACAGGAGAAGAATGTA ATAATTGTTAGATTGATTGTTCAAGATAGCATTGAAGAAAGGATATTGATGATGCAGGAAAGGAAGAAACAGGCAATTGAAGCTTTCGGAATGCAGGGAC CCAAGGAACGACGCGAGGTTAGCTTAGAAGACCTCTGTAGCCTCTTATCCTTGGAATAA
AA sequence Show only first row Show all	>Potri.016G033800.1 pacid=42810449 polypeptide=Potri.016G033800.1.p locus=Potri.016G033800 ID=Potri.016G033800.1.v4.1 annot-version=v4.1 MEAELKEEQEDALGLYMNLYARPDSSSFEDWKYSSSQQIRYKTSHVCSFITHIVGLRNHPAIVFSDHELITLVRYQQCPRDKYAIKVFNSTSMEVGYLHD QASAALSPLIDAQMINLEGEVTDSRTGDVKYSVPCLVRVFSKSTDLENVTQSIFGNTLSLTGEPRTNPETNEGKGGKEKGRIEKLGTLEPPKEVIKAKLL DHQKVGLWWLVNKENSDELPPFWEMKDGLYVNVLTRHRTNRKPEPLHGGIFADDYGTGKTLTLLSLIAFDKVGNVPEGTGEEDEGVSVCSCKKRGRVSEK GTGEPNTHTLLDSNIKESSGGMADKSSSASVAKQTLIVCPSSVCSTWKNQLLEHTEKGSLKLHKYYGDSKIKDVEELKKYDIVLTTYGAFANESFERWCP LLKIEWWRVILDEADVIKNANAMQSKAVSGLTARRRWAVTGAPIQNGSFDLFALIAFLRLDPLSKKSYWQSLLERPLAKKDGNGFSRLQDLMAAISLRRT KDRVLVGRLRSKTVETVRFKIYGDERELYDQMAAESKKVVRKLIATGRLNRSYASIRGAVIRLRQMCNDATPFSLYLKSLLPSDDIGDASEHPEFLRQLI DVLRKDEDFDCAICYCPPTDAVITICKHVFCKRCIRTCLQRTRTSCPICRGRLSMSDLFSAPPESSDPEDPRKSTAIIPSKVSTLIKLLKESRDVRPASK SVVFTIFQKMLVLLEAPLKDAGFNVLRLDALIDARRRGGIIKKFRSAGQNTVLLANVKVSGAGINLTAASEVYLLEPWWNSELEEQAIDRVHQYGQEKNV IIVRLIVQDSIEERILMMQERKKQAIEAFGMQGPKERREVSLEDLCSLLSLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033800 [exp]	0	1
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.019G091600 [exp]	9.94	0.9177
AT4G09190			F-box and associated interacti...		Potri.005G254500 [exp]	12.20	0.8749
AT5G59970			Histone superfamily protein (....		Potri.005G115601 [exp]	17.94	0.8607
					Potri.012G045401 [exp]	24.00	0.9599
					Potri.012G082350 [exp]	25.92	0.9599
					Potri.006G062050 [exp]	35.32	0.9599
AT5G05800			unknown protein		Potri.008G217500 [exp]	36.66	0.9599
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G148200 [exp]	39.82	0.8961
AT1G06280	AS2	LBD2	LOB domain-containing protein ...		Potri.013G123900 [exp]	42.70	0.9599
					Potri.014G028650 [exp]	43.81	0.9599

Compare expression of checked genes

Potri.016G033800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.