Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05130 700 / 0 DNA/RNA helicase protein (.1) AT5G22750 325 / 1e-96 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 321 / 9e-94 Helicase protein with RING/U-box domain (.1) AT1G61140 295 / 4e-85 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G11100 292 / 8e-84 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT3G20010 239 / 4e-66 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G16600 209 / 2e-57 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G50410 201 / 4e-53 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G02670 182 / 6e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05120 169 / 4e-43 Helicase protein with RING/U-box domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033700 [exp] 1409 / 0 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 1111 / 0 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 1056 / 0 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 850 / 0 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.004G189400 [exp] 319 / 3e-94 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 306 / 2e-90 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.007G000700 [exp] 271 / 3e-77 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.004G037700 [exp] 218 / 2e-58 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G046400 [exp] 214 / 3e-57 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039001 [exp] 720 / 0 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10027296 [exp] 368 / 2e-119 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10043365 [exp] 324 / 8e-96 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10011211 [exp] 292 / 1e-83 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 288 / 2e-83 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 280 / 9e-79 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041156 [exp] 273 / 3e-77 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10018465 [exp] 185 / 6e-48 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10030044 [exp] 175 / 7e-45 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10033669 [exp] 122 / 2e-28 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08797 [poplar] [flax] HIRAN HIRAN domain CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.016G034000.1 pacid=42809834 polypeptide=Potri.016G034000.1.p locus=Potri.016G034000 ID=Potri.016G034000.1.v4.1 annot-version=v4.1 ATGGAAGAAGAAGAAGAAGAAGAATATCGTATTCTGCTTGCTTTTGGTGATAGGCGATATGCTCCAACAGAAGAATATCAACAAATTCGACAAGAACAAT TACCACTTGTCATGAATCTTGATGCTTGGAAAGATCCATCTACTTTTCAAGATTGGCTATCTTTTGGTTCACGACCAATCCGGACTGAAACCACCCTTGT TTGTTCTTTTACCACCACTATTGTAGGCCTTAGAGATGCAGAAATCAATGATCATGAATTGCTTCGATTTGTACGTTATCGACAATGCCCTTATGATGAG TATGCTATAAAGGTTTTAAATTCTAGCTCTAGAGAAATGGGGTACCTTTCTACACCAGTTGCTCAGGTTTTATCTCCTTTAGTTGATCTTCGAAAAATTA ATCTTGAAGGTGAGGTGGCTTTTTCAAAAGTTAGACATGACATGTCTATTCCTTGTGCAGTTAGAATCCTTGCAAAGGCAGCTGATGTACAGGGTGTTAG AAAAGAGATTTTGCCACTCGACTTGCTTTTACATAAACTACCTCGTGCAAGTTTTGGTTCATATGAGGATTTGGGGCTTAAAGAAAAGAGTAGGATTGAG AAATTGGGGACTTTGGAGCCACCAAAGAAGGTGATTAAAGCTAAACTTCTTGATCATCAAAAGGAGGGGCTGTGGTGGTTGGTGAATAAAGAGAAGTCGG ATGAGTTGCCCCCTTTTTGGGTGGTGAAAGATGGGTTGTATCTGAATGTTTTGACGAGGCATCAAACGAATAGGAGACCAGAGCCTTTGCATGGTGGGGT TTTTGCTGATGATTATGGATTAGGCAAGACTCTGACCTTGCTTTCTTTGATTGCTTTTGATAAGGTTGGCAATGTTACTGAAGGAACAGGCGAGGAGGAC AGGTTAGAGTTTGTTTCTCGTGGTAAGAATTGGGGAAGGGTGAGTGAAAAGGGTACTGGAGAACAAAAAATGCATAGCCTTTTGGATAGTAATATAAAAG AAAGTTCTGTGCGCATGGCCGGGGAGTCTTCTAGTGCTTTGGTTGCTAAGAAAACACTAGTCGTGTGCCCTTCTGCTGTGTGTTCGACATGGGAAAACCA ACTGCAGGAGCACACTCAAAAAGGTTCACTCAAGCTATACAAGTATTATGGGGATAACAGGACGAAGGATGCAGAGGAGCTTATGAAATATGATATAGTG TTGACCACATATAGTACCTTGGTTGCTGATGGATGTGAGCAAAAACGGTACCCTTTGATGAAGATCGAGTGGTGGCGAGTTATTTTGGATGAGGCTCATG TGATTACGAAGAAAGCAAATGAACAGCAAAGTCGGGAACTTGTTAAATTGACCGCTAGGAGGAGGTGGGCTGTTACAGGAGCACCCATCCAGAATGGATC GTTTGATTTATCTTCTCTGATGACCTTTTTCCGGTTAGATCCACTCTCTACAGAGTACTACTGGCAAGAGTTGTTGCAGAAACATCTTGCTAATGGAGAT GAGAAAGGGTTCGTCCGACTGCAGGAATTAATGGCAACCATTTCTTTGAGGAGAATAAAAGACAAGGTTTTAGTTGGATTGCCATCTAAAACTATAGAGA CAGTTTCCTTCGAATTTTCTGGAGAAGAACGTGAACTGTATAATCAGATGGAAGCAGATTCCAAGAATGTTGTTGCATATTTTATTGCAGCTTATAAACT ACGCAGCCGCTATATATCTGTGCTTTTTTCAGTTATTCAACTTCGGCAGTTATGTAATGACTCGGCCTTGTGCTCTATGGATCTCAGATCATTGCTCCCT TCTGACAATATTGGAGATGGATCCAAACATCCGGAATTGCTTCGAAAGATGATCGATGGGCTTCAAGATGGTGAAGATATTGTCTGTACGGTTTGCCTTG ATCCACCAACTGAGGCTACAATCACAATCTGTGAGCACATATTTTGCAAAAAGTGCATTTGCCATCACCTACAACAGAAAGTAACCGAACAAACCTGCCC AAATTGTCGGCGTCCTATTTCTTTCCCTGACCTGTTCTCAGCCCCTCCAGAATCTTCGGATCCCGAAAACCCTAAAAAACTGTCAAGAACAATCCCTTCC AAAGTCTCAGCTCTCATAAAACTCTTGAAGGAATCTAGGGTTGTAAACTCAATCAGTAAATCAGTAGTTTTTTCACTGTTTGATAAGATGTTGGCATTAA TGGAAGAGCCTCTGGAAGATGCTGGCTTCAATACATTGCGGTTGGATGCATCAACAGATGAAATAAGGCAAGCTGAAATAATCAAGAAATTTAGTTCAGC AGGAGCAGACACGGTTCTGCTTGCCAGTCTCAAGACTTCAGGAACCGGCATAAACCTCACAGCTGCTTCCAAAGTCTACTTGTTGGAGCCATGGTGGAAC TCAGCGGTTGAGGAACAGGCAATAAACCGTGTTCATCAATACGGACAGCAGGAGAATGTAAGAATTGTTAGATTGATTGCTCAAAATAGCATTGAAGAAA GGATATTGGAGATGCAGGAAAGGAAGAAAGTGGCCAATGAAGCTTTTGGAAGGCAAGGACGACCAAGTGAACAACAGGAGGCTAGCATATTTGATCTCTG TCGCCTCTTATTCTGA
AA sequence Show only first row Show all	>Potri.016G034000.1 pacid=42809834 polypeptide=Potri.016G034000.1.p locus=Potri.016G034000 ID=Potri.016G034000.1.v4.1 annot-version=v4.1 MEEEEEEEYRILLAFGDRRYAPTEEYQQIRQEQLPLVMNLDAWKDPSTFQDWLSFGSRPIRTETTLVCSFTTTIVGLRDAEINDHELLRFVRYRQCPYDE YAIKVLNSSSREMGYLSTPVAQVLSPLVDLRKINLEGEVAFSKVRHDMSIPCAVRILAKAADVQGVRKEILPLDLLLHKLPRASFGSYEDLGLKEKSRIE KLGTLEPPKKVIKAKLLDHQKEGLWWLVNKEKSDELPPFWVVKDGLYLNVLTRHQTNRRPEPLHGGVFADDYGLGKTLTLLSLIAFDKVGNVTEGTGEED RLEFVSRGKNWGRVSEKGTGEQKMHSLLDSNIKESSVRMAGESSSALVAKKTLVVCPSAVCSTWENQLQEHTQKGSLKLYKYYGDNRTKDAEELMKYDIV LTTYSTLVADGCEQKRYPLMKIEWWRVILDEAHVITKKANEQQSRELVKLTARRRWAVTGAPIQNGSFDLSSLMTFFRLDPLSTEYYWQELLQKHLANGD EKGFVRLQELMATISLRRIKDKVLVGLPSKTIETVSFEFSGEERELYNQMEADSKNVVAYFIAAYKLRSRYISVLFSVIQLRQLCNDSALCSMDLRSLLP SDNIGDGSKHPELLRKMIDGLQDGEDIVCTVCLDPPTEATITICEHIFCKKCICHHLQQKVTEQTCPNCRRPISFPDLFSAPPESSDPENPKKLSRTIPS KVSALIKLLKESRVVNSISKSVVFSLFDKMLALMEEPLEDAGFNTLRLDASTDEIRQAEIIKKFSSAGADTVLLASLKTSGTGINLTAASKVYLLEPWWN SAVEEQAINRVHQYGQQENVRIVRLIAQNSIEERILEMQERKKVANEAFGRQGRPSEQQEASIFDLCRLLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G034000 [exp]	0	1
AT1G64355			unknown protein		Potri.001G093001 [exp]	1.00	0.7610
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	12.64	0.7519	CLC.3
AT5G24620			Pathogenesis-related thaumatin...		Potri.012G004800 [exp]	19.59	0.7081
AT1G02960			unknown protein		Potri.002G208058 [exp]	21.67	0.7121
					Potri.004G074602 [exp]	22.64	0.6507
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.013G076400 [exp]	24.00	0.7394
AT3G49000			RNA polymerase III subunit RPC...		Potri.015G144900 [exp]	29.12	0.7154
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Potri.002G186400 [exp]	34.20	0.7008	IAA4.1
					Potri.015G099100 [exp]	46.28	0.6604
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.017G067332 [exp]	53.10	0.6997

Compare expression of checked genes

Potri.016G034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.