Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66120 692 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 686 / 0 AAE12 acyl activating enzyme 12 (.1) AT1G65880 684 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT5G16340 595 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 591 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT5G16370 580 / 0 AAE5 acyl activating enzyme 5 (.1) AT2G17650 569 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G68270 563 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 545 / 0 AMP-dependent synthetase and ligase family protein (.1.2) AT1G75960 545 / 0 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036300 [exp] 1141 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036200 [exp] 1125 / 0 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 905 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G082000 [exp] 905 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138451 [exp] 893 / 0 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.002G010600 [exp] 627 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 614 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 586 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068100 [exp] 574 / 0 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007369 [exp] 827 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 826 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 776 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10031367 [exp] 630 / 0 AT1G65890 548 / 0.0 acyl activating enzyme 12 (.1) Lus10016011 [exp] 613 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 588 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10039161 [exp] 564 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10037734 [exp] 551 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 550 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 546 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G034800.1 pacid=42808910 polypeptide=Potri.016G034800.1.p locus=Potri.016G034800 ID=Potri.016G034800.1.v4.1 annot-version=v4.1 ATGGATCAACTTCCAAAATGTGATGCAAATTACGTTCCCCTCACACCCATAAATTTCTTGAAGAGAGCTGCCAAAGTTTATGGCAATCGCCTATCTGTTG TACACGAAAGAACCCACTTCACATGGCAGCAAACATATGAGCGTTGCCTCCGCCTTGCTGATTCTCTCCGTTCCTTTAATATTGCCAAAAACGATGTTGT TTCGGTTTTGGCTCCGAACATTCCAGCTCTGTATGAGATGCACTTTGCAGTGCCCATGGCAGGAGGGGTGATCAATGCCATCAACACGAGGCTAAATCCA AATCACGTTGCCACCATTCTGCGCCATTCAGAAGCGAAGGTCTTCTTTGTTGACTACCAATTTGTGCAGTTGGCAAGGCAGGCCCTCCAAATAATGATGA CAAGTGAATCTATTTCATCCAAATTAGTTCTCCCTTCAGTCGTTCTCATTGATGACATTGAGTCACCGACAGGTGCCATTTTCGGCGAATGGGAGTATGA ACAACTTGTCCGAAAGGGCAATCCAGGGTACATTCCTTATGAGGTCCAAGATGAATGGGATCCCATAGCCTTGAATTACACGTCTGGAACAACATCAGAG CCAAAAGGAGTTGTCTATAGCCACAGAGGTGTCTTCCTTGGCTCCCTTGGCATAATCATTGGCTGGGAAATGGAAAGTGAGCCTGTGTATTTGTGGTCTC TTCCTATGTTCCACTGTAATGGCTGGACCTTAGCTTGGGGCATTGCAGCACGCGGTGGAACCAACGTTTGCCTACGCAATACCACAGCTAAAGACATGTA TAGGAACATTGCTCAGCACAAGGTGACTCACATGTGCTGTGCACCCATTGTTTTCAACATAATTCTTGAGGCCAAACCTGACGAGCGTCGAGAAATATCT TCTCCTGTCCAAATACTTGTCGGTGGTGCACCACCACCGGCCTCACTTCTTGAAAAGATGAAACCATTAGGATTCCATGTCACTCATTCCTATGGCCTGA CAGAGGTTGGACCAGCCCTTGTGTGCGAGTGGCAAGCTAAGTGGAACAATCTTCCTAGCCAAGATCAGTCAAGAATCATGGCTAGACAAGGGATTAACAC AGTAGCTCTTGCTCATATGGATGTTAAAGATTTGAGTACAATGATCAGCGTGCCTTGGGATGGTAAAACAATGGGGGAAATTGTTCTGAGAGGAAGCACC GTTATGAAAGGATATTTCAAGGACCCAAAGGCCACCGCGAAAGCATTCAAGAATGGATGGTTTGCTACAGGCGATATTGGGGTCATACATCCTGACGGAT ACTTGGAAATCAAGGACAGATCAAAAGATGTCATTATATCTGGTGGTGAAAATATCAGCAGTGTAGAATTAGAGTCTGTCCTTTACAGCCATCCAAGAGT CCTAGAGGCAGCTGTGGTGGCCATGCCACACCCAGTTTGGGGAGAAAGTCCTTGCGCTTTTCTTGCCATTAAGAAGAACTCAGAAGGGAAATCTGATGAT GTCAAAGAAGCTGATATTATTGCTTATTGCAGGAAAAAGCTTCCCCATTATATGGTTCCAAAGAAGGTGGAGTTCATGTCTGAGTTACCCAAGACTTCAA CAGGAAAAGTTCAGAAATTCCAGTTAAGGGATTTAACACGAAACTTTGTTGTCTCGGAGAACTTTCCTAGCAAGAAGACTGCCCAAATCAATGCCAAAAC GGAAACACAAGGACATAAGGCTCAGCCAGTTCGTGTTCCTTCCTCTCGTCTTTGA
AA sequence Show only first row Show all	>Potri.016G034800.1 pacid=42808910 polypeptide=Potri.016G034800.1.p locus=Potri.016G034800 ID=Potri.016G034800.1.v4.1 annot-version=v4.1 MDQLPKCDANYVPLTPINFLKRAAKVYGNRLSVVHERTHFTWQQTYERCLRLADSLRSFNIAKNDVVSVLAPNIPALYEMHFAVPMAGGVINAINTRLNP NHVATILRHSEAKVFFVDYQFVQLARQALQIMMTSESISSKLVLPSVVLIDDIESPTGAIFGEWEYEQLVRKGNPGYIPYEVQDEWDPIALNYTSGTTSE PKGVVYSHRGVFLGSLGIIIGWEMESEPVYLWSLPMFHCNGWTLAWGIAARGGTNVCLRNTTAKDMYRNIAQHKVTHMCCAPIVFNIILEAKPDERREIS SPVQILVGGAPPPASLLEKMKPLGFHVTHSYGLTEVGPALVCEWQAKWNNLPSQDQSRIMARQGINTVALAHMDVKDLSTMISVPWDGKTMGEIVLRGST VMKGYFKDPKATAKAFKNGWFATGDIGVIHPDGYLEIKDRSKDVIISGGENISSVELESVLYSHPRVLEAAVVAMPHPVWGESPCAFLAIKKNSEGKSDD VKEADIIAYCRKKLPHYMVPKKVEFMSELPKTSTGKVQKFQLRDLTRNFVVSENFPSKKTAQINAKTETQGHKAQPVRVPSSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	0	1
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.007G009400 [exp]	1.00	0.9863
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	2.82	0.9853
AT2G20030			RING/U-box superfamily protein...		Potri.006G239500 [exp]	3.74	0.9759
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	4.00	0.9837
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G042800 [exp]	4.24	0.9849
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246500 [exp]	4.69	0.9651
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.012G137300 [exp]	5.47	0.9795
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	5.47	0.9803
AT1G64160			Disease resistance-responsive ...		Potri.003G134400 [exp]	6.00	0.9740	Pt-DRR206.5
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G125600 [exp]	8.24	0.9590	Pt-HMA5.3

Compare expression of checked genes

Potri.016G034800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.