Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55290 385 / 6e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G62610 380 / 7e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G63380 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46170 376 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 375 / 4e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G17845 369 / 8e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G01980 134 / 1e-37 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G24360 119 / 1e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 95 / 1e-22 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 94 / 1e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056100 [exp] 126 / 5e-34 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G067332 [exp] 122 / 5e-33 AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.008G178700 [exp] 123 / 8e-33 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G327800 [exp] 118 / 2e-31 AT3G01980 323 / 6e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.004G200100 [exp] 110 / 2e-28 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 109 / 4e-28 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 107 / 2e-27 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 100 / 1e-24 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 99 / 4e-24 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006699 [exp] 442 / 3e-158 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007039 [exp] 410 / 3e-145 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006698 [exp] 404 / 6e-143 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007038 [exp] 383 / 8e-135 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006695 [exp] 129 / 2e-37 AT3G55310 107 / 9e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 124 / 5e-33 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012548 [exp] 114 / 5e-30 AT3G01980 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10015821 [exp] 117 / 2e-29 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041545 [exp] 107 / 2e-27 AT3G01980 346 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10029369 [exp] 100 / 7e-25 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.016G035200.1 pacid=42810126 polypeptide=Potri.016G035200.1.p locus=Potri.016G035200 ID=Potri.016G035200.1.v4.1 annot-version=v4.1 ATGTCAACCAAAGGAGCAACCCAGTTGGAGCCATGGTGTGATTTAAGGAACAAAGTGGTTCTAGTAACTGGTGCATCATCTGGTTTAGGCAAGGACTTTT GTCTTGACTTGGCTAAAGCTGGTTGCAGGATTTTAGCAGCAGCTCGTCGTGTAGATCGTTTAAAGTCTTTATGTGATGAAATCAATCAGATGAGTTTGTC TTTCCCTACTTCCTCCTCAACAGCTGAGGTGGATATTCAGCCGCGAGCGGTGGCGGTGGAGTTGGATGTTTCTGCTGATGGAAACACTATTGATAAGTGT GTACAGAAAGCTTGGGATGCTTTTGGTGGGATTGATGCCTTGGTTAATAATGCTGGTGTTAGAGGAACTGTAAGGGATCCATTGGAATTGTCTGAGGAGG AATGGAATCATGTTATAAGAACGAACACGACAGGAACTTGGCTGGTTTCGAAGGCTGTTTGTATACGAATGCGTGATTCGAAACGAGGAGGATCAGTGAT TAATATAGCTTCTATTGCTGGTCTTAATCGTGGACAATTGCCTGGAGGCATTCACTACGTTGCTTCAAAGACAGGCGTGAACGCCATTTCAAAGGTCATG GCTATGGAATTGGGAGCATACAAAATCAGAGTGAACTCAATATCACCCGGACTTTTCAAATCGGAGATCACACAGGGCCTTATGCAGAAGGACTGGCTCA GTAATGTTGCTCTGAAAACAGTCCCTTTGAGAACATTTGGCACAGCAGATCCAGCATTAACATCACTTGCTCGCTACCTAATCCACGATTCTTCAGAATA TGTGACAGGCAACAATTTCATCGTCGATGCTGGGGCAACCCTACCAGGAGTCCCTCTATTCTCTTCCCTTTGA
AA sequence Show only first row Show all	>Potri.016G035200.1 pacid=42810126 polypeptide=Potri.016G035200.1.p locus=Potri.016G035200 ID=Potri.016G035200.1.v4.1 annot-version=v4.1 MSTKGATQLEPWCDLRNKVVLVTGASSGLGKDFCLDLAKAGCRILAAARRVDRLKSLCDEINQMSLSFPTSSSTAEVDIQPRAVAVELDVSADGNTIDKC VQKAWDAFGGIDALVNNAGVRGTVRDPLELSEEEWNHVIRTNTTGTWLVSKAVCIRMRDSKRGGSVINIASIAGLNRGQLPGGIHYVASKTGVNAISKVM AMELGAYKIRVNSISPGLFKSEITQGLMQKDWLSNVALKTVPLRTFGTADPALTSLARYLIHDSSEYVTGNNFIVDAGATLPGVPLFSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55290			NAD(P)-binding Rossmann-fold s...		Potri.016G035200 [exp]	0	1
AT1G29290			unknown protein		Potri.011G070500 [exp]	4.24	0.9064
					Potri.008G019250 [exp]	5.29	0.9108
AT5G65380			MATE efflux family protein (.1...		Potri.002G102100 [exp]	6.16	0.9067
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.006G120600 [exp]	10.72	0.9000	GT4.2
					Potri.004G056374 [exp]	11.31	0.8902
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.003G079200 [exp]	12.08	0.7587	ACX1.1
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.001G268600 [exp]	12.96	0.9029	CADL9,CAD.6
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.001G327800 [exp]	18.33	0.8152
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	19.07	0.8925
AT4G38810			Calcium-binding EF-hand family...		Potri.009G127800 [exp]	19.23	0.7967

Compare expression of checked genes

Potri.016G035200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.