Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41130 231 / 2e-76 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 196 / 9e-63 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68810 142 / 2e-40 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 138 / 5e-39 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT2G40200 121 / 2e-33 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 76 / 2e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 49 / 2e-06 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 47 / 4e-06 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G32640 45 / 3e-05 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G28790 45 / 3e-05 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G037100 [exp] 408 / 2e-146 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 153 / 7e-45 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 144 / 2e-41 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 120 / 1e-32 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 108 / 2e-28 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 108 / 2e-28 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G055700 [exp] 107 / 5e-28 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G105300 [exp] 105 / 1e-27 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G065500 [exp] 103 / 5e-27 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018020 [exp] 231 / 5e-76 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 228 / 8e-75 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 152 / 1e-44 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 147 / 6e-42 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 145 / 6e-42 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10021711 [exp] 146 / 8e-42 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 110 / 4e-29 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013917 [exp] 110 / 5e-29 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 108 / 2e-28 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038306 [exp] 103 / 9e-27 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G035400.1 pacid=42810144 polypeptide=Potri.016G035400.1.p locus=Potri.016G035400 ID=Potri.016G035400.1.v4.1 annot-version=v4.1 ATGCAGCCTGAAAACTGCTCAGAGAATTCACAGTTGTACCGCTTTCTTGCAGAGAATGGAATGATTAACGTTGGTGCATATGGTTTCCCAGGCGCCGCGA TGCAAACCTTGTGTACCTCATCATCCACCTCCTACCATAACAATAATTACCAATTTGAAAGTTCTGTAATCACTGATATGACACCACAAGATAGAGCTCT TGCTGCTTTGAAGAATCATAAGGAAGCTGAGAAGAGAAGGAGAGAGAGGATTAACTCTCATCTTGATAAGCTTAGAGGCCTCCTTCTTTGCAATTCCAAG ACAGACAAAGCTTCACTTCTAGCAAAGGTTGTTCAAAGAGTTAGAGAGCTGAAACAACAGACCTCAGAGCTTTCTGGACTTGAAACTTTCCCATCAGAAA CAGATGAAGTCACTGTACTCTCTGGTGAATATTCAAGCGATGGACAGCTAATATTTAAGGCATCTCTTTGTTGTGAAGACCGGTTGGATCTCATGCCAGA ACTAAATGAGATACTGAAATCTCTACATTTGAAGACATTGAAAGCTGAGATGGTAACACTTGGAGGAAGAATTAGGAATGTTCTTATCATTGCGGCCGAT AAAGATCATAGTGTTGAGTCGGTCCATTTCTTGCAAAATGCATTGAAATCTTTGCTAGAACGCTCGAATTCTAGCGAGAAATCGAAAAGGCGAAGGATAT TAGACCGAAAATTAGTAATCCAATGA
AA sequence Show only first row Show all	>Potri.016G035400.1 pacid=42810144 polypeptide=Potri.016G035400.1.p locus=Potri.016G035400 ID=Potri.016G035400.1.v4.1 annot-version=v4.1 MQPENCSENSQLYRFLAENGMINVGAYGFPGAAMQTLCTSSSTSYHNNNYQFESSVITDMTPQDRALAALKNHKEAEKRRRERINSHLDKLRGLLLCNSK TDKASLLAKVVQRVRELKQQTSELSGLETFPSETDEVTVLSGEYSSDGQLIFKASLCCEDRLDLMPELNEILKSLHLKTLKAEMVTLGGRIRNVLIIAAD KDHSVESVHFLQNALKSLLERSNSSEKSKRRRILDRKLVIQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.016G035400 [exp]	0	1
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.006G037100 [exp]	1.41	0.8794
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.001G169600 [exp]	4.00	0.8217
AT4G32272			Nucleotide/sugar transporter f...		Potri.018G127400 [exp]	8.12	0.7557
AT5G14510			ARM repeat superfamily protein...		Potri.001G344200 [exp]	8.94	0.8608
AT1G70550			Protein of Unknown Function (D...		Potri.010G044300 [exp]	8.94	0.7471
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G030900 [exp]	11.53	0.8234
AT5G63710			Leucine-rich repeat protein ki...		Potri.001G306000 [exp]	16.73	0.7658
AT4G05430			Carbohydrate-binding X8 domain...		Potri.007G111000 [exp]	18.30	0.8324
AT3G26350			unknown protein		Potri.010G049000 [exp]	21.35	0.8417
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.002G153600 [exp]	22.22	0.8053

Compare expression of checked genes

Potri.016G035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.