Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CRK1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41140 965 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 958 / 0 Protein kinase superfamily protein (.1) AT3G50530 871 / 0 CRK CDPK-related kinase (.1.2) AT3G19100 764 / 0 Protein kinase superfamily protein (.1) AT1G49580 755 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G46700 664 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 633 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 616 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 465 / 1e-158 CPK16 calcium-dependent protein kinase 16 (.1) AT5G66210 447 / 4e-152 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040500 [exp] 1050 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.005G135900 [exp] 873 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 869 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.004G143700 [exp] 795 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.009G105700 [exp] 740 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.002G176700 [exp] 699 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.014G103500 [exp] 667 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 666 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.005G113600 [exp] 437 / 1e-147 AT5G66210 870 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002966 [exp] 887 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 757 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10008875 [exp] 649 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10009342 [exp] 634 / 0 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10023234 [exp] 618 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10041914 [exp] 444 / 3e-150 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 436 / 3e-148 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10009078 [exp] 394 / 2e-131 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10038460 [exp] 349 / 1e-113 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10009947 [exp] 346 / 2e-112 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G035500.1 pacid=42810336 polypeptide=Potri.016G035500.1.p locus=Potri.016G035500 ID=Potri.016G035500.1.v4.1 annot-version=v4.1 ATGGGACTTTGTCATGGAAAACCCATTGAGCTCCAAAAAAATCAATCCAAAAACAACACACTCTCCATTGAAACAGACTCAACACAGCCAGCAAATTCAC ACACTAGCAAGACCTCAAACTTTCCCTTTTACAGTCCAAGTCCATTACCAAGTCTCTTCAAGACTTCACCTGCTATATCAAGTGTAAGCTCCACTCCTTT GAGGATTTTCAAGAGGCCTTTTCCACCTCCTTCTCCTGCAAAGCATATACGTGCATTACTTGCAAGAAGGCATGGCTCTGTTAAGCCTAACGAAGCTTCA ATTCCTGAGGGAAGTGAAAGTGATATTGCTTTGGACAAGAATTTTGGGTTTTCTAAGCAGTTTGTGAGTCACTATGAGCTTGGTGAGGAAGTGGGGCGTG GACATTTTGGGTATACTTGCTCTGCTAAGGCAAAGAAAGGGAGCTTGAAAGGCCAGGATGTGGCAGTCAAAGTTATTCCGAAGTCCAAGATGACCACTGC AATTGCTATAGAGGATGTGAGACGTGAAGTGAAAATATTACGGGCTCTAACGGGACATAATAATCTAGTGCAGTTCTATGATGCCTACGAAGATGATGAC AATGTCTATGTTGTAATGGAGTTGTGCAAAGGCGGTGAATTATTGGATAGGATACTCTCAAGGGGTGGAAAATACTCAGAAGAAGATGCAAAGACTGTTA TGGTTCAGATATTAAGTGTGGTTGCCTACTGCCATCTCCAAGGTGTTGTCCATCGAGACTTAAAGCCTGAGAATTTTCTCTTTACCACCAAGGAGGAGAA TTCCCCATTGAAAGCCATTGATTTTGGACTCTCTGACTATGTAAAGCTAGATGAGAGGTTAAATGACATCGTGGGAAGTGCATATTATGTAGCTCCTGAA GTTCTACACAGATCGTATGGAACTGAGGCAGACATGTGGAGTATTGGTGTAATTGCTTATATTCTTCTATGTGGTAGCCGACCGTTTTGGGCCCGGACAG AATCTGGCATCTTTCGAGCTGTTTTGAAAGCAGATCCAAGCTTTGATGAAGCTCCTTGGCCTTCTTTATCCCCTGAAGCAATAGATTTTGTGAAGAGACT GTTGAACAAGGACTATCGGAAGAGACTAACAGCTGCTCAGGCTCTGAGTCACCCATGGCTGGCTAATCATCATGACTTAAAAATTCCATTGGATATGATA GTATACAAGCTTGTAAAAGCTTATATAAGCTCATCTTCTCTTCGGAAATCTGCGTTGGGGGCTCTGGCGAAGACATTAACAGTTGCTCAGCTAGCTTACC TGCGGGAACAATTTACACTGTTGGGGCCAAGCAAAAATGGCTTCATTTCTATGCAGAACTTCAAAACAGCTGTAATAAAGCACTCTACAGATGCTATGAA GGATTCCAGGGTCCTTGATTATGTTAATATGATTAGTACTCTTCAATACAGAAAATTGGATTTTGAAGAATTTTCTGCTGTTGCCATAAGTGTGCATCAG CTGGAAGGAATGGATTGTTGGGAGCAACATGCAAGGCGTGCCTATGAGTTGTTCGAGAAGGATGGCAACAGACCGATTATGATAGAGGAGCTTGCCTCGG AACTTGGCCTTAGCCCATCAGTACCAGTTCATGTGGTTCTCCAGGACTGGATAAGACATTCAGATGGGAAACTAAGCTTCTTGGGGTTTGTCAGGCTTCT CCATGGAGTTTCTTCACGAACATTTCAGAAGGCTTGA
AA sequence Show only first row Show all	>Potri.016G035500.1 pacid=42810336 polypeptide=Potri.016G035500.1.p locus=Potri.016G035500 ID=Potri.016G035500.1.v4.1 annot-version=v4.1 MGLCHGKPIELQKNQSKNNTLSIETDSTQPANSHTSKTSNFPFYSPSPLPSLFKTSPAISSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEAS IPEGSESDIALDKNFGFSKQFVSHYELGEEVGRGHFGYTCSAKAKKGSLKGQDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHNNLVQFYDAYEDDD NVYVVMELCKGGELLDRILSRGGKYSEEDAKTVMVQILSVVAYCHLQGVVHRDLKPENFLFTTKEENSPLKAIDFGLSDYVKLDERLNDIVGSAYYVAPE VLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSPEAIDFVKRLLNKDYRKRLTAAQALSHPWLANHHDLKIPLDMI VYKLVKAYISSSSLRKSALGALAKTLTVAQLAYLREQFTLLGPSKNGFISMQNFKTAVIKHSTDAMKDSRVLDYVNMISTLQYRKLDFEEFSAVAISVHQ LEGMDCWEQHARRAYELFEKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.016G035500 [exp]	0	1	CRK1.2
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.011G145800 [exp]	1.00	0.8713
AT1G65810			P-loop containing nucleoside t...		Potri.008G143000 [exp]	3.00	0.8291
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	5.65	0.8435
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059300 [exp]	8.77	0.7987
AT3G60470			Plant protein of unknown funct...		Potri.014G053700 [exp]	11.53	0.7856
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.006G040500 [exp]	12.40	0.7927	CRK1.1
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.003G098200 [exp]	12.48	0.7062
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Potri.010G125600 [exp]	14.24	0.7742
AT5G56520			unknown protein		Potri.003G221500 [exp]	15.49	0.7385
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	16.12	0.7933

Compare expression of checked genes

Potri.016G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.