Plant FIBer expression Database

Potri.016G035600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56750 549 / 0 unknown protein
AT2G41150 529 / 0 unknown protein
AT4G12700 88 / 1e-18 unknown protein
AT2G04280 87 / 3e-18 unknown protein
AT4G08810 77 / 3e-15 SUB1 calcium ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G040400
[exp]
662 / 0 AT3G56750 567 / 0.0 unknown protein
Potri.014G170200
[exp]
85 / 2e-17 AT2G04280 862 / 0.0 unknown protein
Potri.001G005500
[exp]
80 / 6e-16 AT4G08810 762 / 0.0 calcium ion binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022403
[exp]
607 / 0 AT2G41150 560 / 0.0 unknown protein
Lus10018111
[exp]
599 / 0 AT2G41150 555 / 0.0 unknown protein
Lus10023250
[exp]
566 / 0 AT2G41150 547 / 0.0 unknown protein
Lus10008860
[exp]
564 / 0 AT2G41150 545 / 0.0 unknown protein
Lus10041091
[exp]
85 / 1e-17 AT2G04280 745 / 0.0 unknown protein
Lus10036415
[exp]
84 / 3e-17 AT2G04280 828 / 0.0 unknown protein
Lus10013761
[exp]
81 / 4e-16 AT4G08810 836 / 0.0 calcium ion binding (.1)
Lus10039176
[exp]
75 / 3e-14 AT4G08810 845 / 0.0 calcium ion binding (.1)
Lus10039175
[exp]
57 / 5e-09 AT4G08810 463 / 5e-163 calcium ion binding (.1)
PFAM info
Representative CDS sequence
>Potri.016G035600.1 pacid=42809807 polypeptide=Potri.016G035600.1.p locus=Potri.016G035600 ID=Potri.016G035600.1.v4.1 annot-version=v4.1
ATGGCAACAATAAACAAACCCCTAAAGCCAAAACCTTTAACAAAACTCAGATCCCCAATTCTCACTTTAATACTTTGCATCTTAGCCATTGCATTATTGT
GCTTGTTTTCTTCACTAATTTCCACAAATGGGTTCTCTTTTTCATCTCCAAAAACCTTAAAGAACTTACCAAAACCCTATAGACAGCACACAATTCATGA
GAAGTACTTGTATTGGGGTAGCAGAATTGATTGTCCTGGTAAACATTGTGATTCTTGTGAAGGTTTGGGTCATCAAGAGTCTAGCCTTAGGTGTGCTCTT
GAAGAAGCCATGTTCTTGAATAGAACTTTTGTGATGCCTTCAAGGATGTGTATCAATCCAATACACAATAAGAAGGGGATCCTTCATCAGTCTGGCAAGT
TGAATCCAGAGGAAAGGTGGGCTGAAAGCTCTTGTGCCATGGACACTTTGTATGATATGGATCTCATATCAGAAACTGTACCTGTAATCTTAGACAACTC
AAAAGATTGGTTTCGGGTACTATCGACGAGTATGAGGTTGGGAGCTAGAGGAGTGGCCCATGTGGAAGGAATAAGTCGGGCTGATGTCAAAGAGAATAGT
CACTACTCGAACCTCTTGCTCATTAATCGAACAGCAAGCCCTCTTTCATGGTTCATGGAATGCAAGGACCGAAACAACCGCGGTGCTATAATGTTGCCAT
ATTCCTTTCTTCCTACAATGGCATCACAAAGTTTAAGGGATGCTGCGGATAAGGTTATAGCACTTCTTGGTGATTATGATTCCATGCATGTTCGTCGAGG
CGATAAAATAAAAACCAGGAAGGACAGGTTTGGTGTTTATAGGACCCTACATCCTCATCTTGACAGGGATACACGTCCAGAGTTTATACTCCACAGGATT
GAAAAATGGGTTCCACCTGGACGAACTCTTTTTATTGCTTCAAATGAGAAGACAACAGGATTCTTTTCACCTCTCGCTGTCAGATACAAATTGGCATATT
CATCTAACTACAGCGGAATCCTGGATCCCGTGATTGAGAACAACTATCAATTATTTATGATTGAAAGGCTTATTCTGATGGGTGCCAAAACCTTCATTAA
AACATTCAAGGAAGTTGATAATGATCTTAGCCTCACCGACGATCCAAAGAAGAATACCAAGTCATGGCAATTACCTGTTTATACCATGGATGAAGTAGAG
TAA
AA sequence
>Potri.016G035600.1 pacid=42809807 polypeptide=Potri.016G035600.1.p locus=Potri.016G035600 ID=Potri.016G035600.1.v4.1 annot-version=v4.1
MATINKPLKPKPLTKLRSPILTLILCILAIALLCLFSSLISTNGFSFSSPKTLKNLPKPYRQHTIHEKYLYWGSRIDCPGKHCDSCEGLGHQESSLRCAL
EEAMFLNRTFVMPSRMCINPIHNKKGILHQSGKLNPEERWAESSCAMDTLYDMDLISETVPVILDNSKDWFRVLSTSMRLGARGVAHVEGISRADVKENS
HYSNLLLINRTASPLSWFMECKDRNNRGAIMLPYSFLPTMASQSLRDAADKVIALLGDYDSMHVRRGDKIKTRKDRFGVYRTLHPHLDRDTRPEFILHRI
EKWVPPGRTLFIASNEKTTGFFSPLAVRYKLAYSSNYSGILDPVIENNYQLFMIERLILMGAKTFIKTFKEVDNDLSLTDDPKKNTKSWQLPVYTMDEVE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56750 unknown protein Potri.016G035600
[exp]
0 1
AT5G06940 Leucine-rich repeat receptor-l... Potri.016G051600
[exp]
6.48 0.8927
AT5G65270 AtRABA4a RAB GTPase homolog A4A (.1) Potri.005G073000
[exp]
9.89 0.8424 Pt-ATGB3.3
AT5G06940 Leucine-rich repeat receptor-l... Potri.006G056600
[exp]
10.29 0.8900
AT1G04040 HAD superfamily, subfamily III... Potri.002G257700
[exp]
21.07 0.8884
AT5G51560 Leucine-rich repeat protein ki... Potri.015G130100
[exp]
22.04 0.8783
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Potri.016G000300
[exp]
22.29 0.8775
AT5G66920 SKS17 SKU5 similar 17 (.1) Potri.007G038300
[exp]
24.49 0.8882
AT5G51560 Leucine-rich repeat protein ki... Potri.012G128700
[exp]
26.60 0.8734
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.015G104700
[exp]
27.82 0.8755
AT3G53380 Concanavalin A-like lectin pro... Potri.006G130000
[exp]
30.74 0.8610

Potri.016G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.