Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18593 149 / 2e-44 dual specificity protein phosphatase-related (.1) AT3G23610 78 / 8e-17 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 76 / 2e-16 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT5G23720 62 / 4e-10 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G55270 57 / 1e-08 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT2G04550 51 / 3e-07 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040300 [exp] 645 / 0 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.004G056600 [exp] 135 / 5e-39 AT4G18593 172 / 2e-56 dual specificity protein phosphatase-related (.1) Potri.010G033000 [exp] 77 / 1e-16 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 60 / 2e-09 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.010G210900 [exp] 59 / 3e-09 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 58 / 5e-09 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.015G105000 [exp] 55 / 6e-08 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 46 / 1e-05 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022402 [exp] 529 / 0 AT4G18593 147 / 2e-43 dual specificity protein phosphatase-related (.1) Lus10018112 [exp] 517 / 0 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Lus10013913 [exp] 137 / 2e-39 AT4G18593 169 / 6e-55 dual specificity protein phosphatase-related (.1) Lus10001888 [exp] 123 / 4e-34 AT4G18593 149 / 5e-47 dual specificity protein phosphatase-related (.1) Lus10013914 [exp] 123 / 4e-34 AT4G18593 148 / 1e-46 dual specificity protein phosphatase-related (.1) Lus10034033 [exp] 79 / 9e-18 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10021940 [exp] 76 / 6e-16 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 69 / 2e-13 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 63 / 1e-10 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 62 / 3e-10 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.016G035700.2 pacid=42809889 polypeptide=Potri.016G035700.2.p locus=Potri.016G035700 ID=Potri.016G035700.2.v4.1 annot-version=v4.1 ATGCCGTATCTTGTACGCGAGAATCTTTTCATCGGAAACATAAGCGACGCGGCTGAGGTTCTGCAAAACGGAAGTTCGGAAATAACGCATATTTTATCTG TCTTAAGTTCCGTGTCTATATCGTTCTTTACGGAATGGAGAAGCGGTGTGGTAATCCCGGCGAAGGAGATAAAGAAAGTGTGCGTGGGTGACGGTGAGGA TGAGTGGAGGAGTTGTTTGGCGGCGAATAAGGTTTTGTATGGGTTAGAGTATGCAGGGAAGGATTTGAAACTGGTGAGAATGGCGGTGCCGATTAGGGAT ATGGAGAGTGAGGATTTGTTGGATTATTTGGATGTTTGTTTGGATTTTATTGAGAAGAGTAGAAAAGAAGGAGCTGTTTTGGTGCATTGTTTTGCTGGCG TTTCGAGAAGTGCAGCTATCATTACAGCGTACTTGATGAAAACTGAACAGTTGTCTCTTGAAGATGCTCTTGAATCCCTAAGGCGAAGCTGTGAGTCTGT TTGTCCCAATGATGGCTTTTTAGAACAGTTGAAAATGTTTGAGGAAATGGGGTTCAAGGTTGATCATGCTAGTCCCATATACAAGCGGTTTCGCCTGAAA GTATTGGGTGAGTTTTACAACCGTGGAGAGAAGATAGACAGTTCTAAATTTGGGGCAGATCCTGGTGTACCTACACAAATTTCCTCTGAGGAAGAAGCAT CTCCAAATGAAGGGAAAAAGGCTATTCCTGCATACCGCTGCAAGAAATGCCGTCGAGTAGTTGCACTGCAGGAGAATGTTGTGGATCATGTTCCAGGAGA GGGCGAGACATCTTTTGCATGGGGCAAGCAGAAAAGTGGCAACCCCTTTAACAAGTCCGATGAGTCTGAGTGTTCATCTCTTTTTGTTGAGCCTCTGAAG TGGATGACAGGAGTTGAGGAAGGTGCATTGGAGGGAAAGTTGTCCTGTGCTCATTGCGAAGCTCGTTTGGGTTACTTCAATTGGTCAGGTATCCAATGCA GTTGTGGGAGCTGGATTACTCCAGCCTTTCAGCTACATAAAAGTCGAGTGGATGTTAGCACTGTCTAA
AA sequence Show only first row Show all	>Potri.016G035700.2 pacid=42809889 polypeptide=Potri.016G035700.2.p locus=Potri.016G035700 ID=Potri.016G035700.2.v4.1 annot-version=v4.1 MPYLVRENLFIGNISDAAEVLQNGSSEITHILSVLSSVSISFFTEWRSGVVIPAKEIKKVCVGDGEDEWRSCLAANKVLYGLEYAGKDLKLVRMAVPIRD MESEDLLDYLDVCLDFIEKSRKEGAVLVHCFAGVSRSAAIITAYLMKTEQLSLEDALESLRRSCESVCPNDGFLEQLKMFEEMGFKVDHASPIYKRFRLK VLGEFYNRGEKIDSSKFGADPGVPTQISSEEEASPNEGKKAIPAYRCKKCRRVVALQENVVDHVPGEGETSFAWGKQKSGNPFNKSDESECSSLFVEPLK WMTGVEEGALEGKLSCAHCEARLGYFNWSGIQCSCGSWITPAFQLHKSRVDVSTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18593			dual specificity protein phosp...		Potri.016G035700 [exp]	0	1
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Potri.013G026800 [exp]	8.77	0.5790
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.004G134500 [exp]	14.86	0.6443
AT3G04480			endoribonucleases (.1)		Potri.019G019600 [exp]	15.23	0.6179
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Potri.017G099200 [exp]	28.72	0.5852
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	31.93	0.5603	CDC48.3
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.019G066200 [exp]	34.20	0.5660
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075800 [exp]	35.70	0.5466	ATUBA1.3
AT5G25080			Sas10/Utp3/C1D family (.1)		Potri.018G018100 [exp]	37.04	0.5644
AT2G39800		ATP5CS, P5CS1	delta1-pyrroline-5-carboxylate...		Potri.010G198400 [exp]	50.83	0.5369	Pt-P5CS.1
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	54.29	0.5198

Compare expression of checked genes

Potri.016G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.