Plant FIBer expression Database

Potri.016G035900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26850 389 / 2e-134 F-box family protein (.1)
AT2G32560 380 / 1e-130 F-box family protein (.1)
AT2G41170 357 / 9e-122 F-box family protein (.1)
AT3G53000 48 / 6e-06 ATPP2-A15 phloem protein 2-A15 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G040000
[exp]
650 / 0 AT2G26850 374 / 1e-128 F-box family protein (.1)
Potri.001G273900
[exp]
451 / 4e-158 AT2G26850 440 / 3e-154 F-box family protein (.1)
Potri.009G068100
[exp]
450 / 1e-157 AT2G32560 444 / 1e-155 F-box family protein (.1)
Potri.003G121900
[exp]
42 / 0.0007 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036061
[exp]
393 / 2e-135 AT2G32560 445 / 3e-156 F-box family protein (.1)
Lus10036444
[exp]
369 / 8e-126 AT2G26850 391 / 9e-135 F-box family protein (.1)
Lus10008642
[exp]
42 / 0.0006 AT3G53000 470 / 6e-169 phloem protein 2-A15 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.016G035900.1 pacid=42810078 polypeptide=Potri.016G035900.1.p locus=Potri.016G035900 ID=Potri.016G035900.1.v4.1 annot-version=v4.1
ATGCTTTTCTTACTGATTTCTTGTTTTTCTTTTATTTTCTTTTTCAAGTCATTTTCTTTCAAGCCAATGAAGAGTGAGGGGAAGATGTTGTTGTTGGGGC
CTTGGTTTTGGGAGGGGTTTTCAAGTTTTCTTGTTTCATGGTTCAATAAAGGAAGGTTTGCTGTTAGTATGTTTCAAGTTCCTTTGAAAATGCCACTGAC
GAAGGTGAATCTTTGTTCAGAAGTTCAAGAGATTGTGGAGGAGGAGGGGGAGAGCCCTTCTCTTCTGGATTTGCCTGAGTTGGCTTTGGAATGCATTCTC
GAGAGGCTTTCACCAGCTGAGTTGTGTAGCATGGCTGGAGTTTGTAACTCTCTGAGGGATAGGTGTAGAAGTGATCATTTATGGGAGAAACATTTGAAGC
ACAAATGGGGCAGAGTGATTTGTGAGGCTGCTTGTAAGGAATGGCAATGTCATATAGCTTCAAGGAAGAGGCCAAGCTTTTTAGATCAAAGAAATAAAAA
GGGTTTCTTTGGATCTCTTATGAGTATGTGGCCTTTTTCCTGGTATAAATCTCAGTGTGAAAGTAGAAACAAGCCCACAACTTGTTTACCAGTTGATTCA
ATCATGGCTTTATATCTCTCTCTTGAAAGTGGCAAGTTTTGGTTTCCAGCGCAGGTTTATAATCGTGAGAATGGACATGTTGGATTTATGCTATCATGTT
ATGATGCACAACTTAGCTATGATTCCAAGACAGACACCTTTCAGGCAAGGTATTCTCCTTTTGCACGGCGAACAATAGAAGAGAGCATACACCGGGATAG
GCTCAGAGCACCACCAGTTGAAACTCCTGCACATGTTCTTCATACTTCTGATTGTTTGAATGACTTGAAACCTGGCGATCACATTGAGATCCAGTGGAGG
AGAAGCAAAGAATTCCCTTATGGTTGGTGGTATGCTGTTGTGGGGCATCAGGAGTTATGTGATGGGAATGAAAATCGCTGCCGTTGCCGATACAGTGATA
CAGTGGTACTGGAGTTCAGCCAATACACTCCTGGCTCTCGATGGAGACAGACGATAGTAAACAGGAAGGACCACAGGGAAGTAGGTAATGAAGCTGACGG
TTTCTATGGAGGAATTAGAAAGCTTTACAAAGAGGAAGAGATATCAAAATGGAAGCAGCTATGGCCAAAACAAATCTTCGATTAG
AA sequence
>Potri.016G035900.1 pacid=42810078 polypeptide=Potri.016G035900.1.p locus=Potri.016G035900 ID=Potri.016G035900.1.v4.1 annot-version=v4.1
MLFLLISCFSFIFFFKSFSFKPMKSEGKMLLLGPWFWEGFSSFLVSWFNKGRFAVSMFQVPLKMPLTKVNLCSEVQEIVEEEGESPSLLDLPELALECIL
ERLSPAELCSMAGVCNSLRDRCRSDHLWEKHLKHKWGRVICEAACKEWQCHIASRKRPSFLDQRNKKGFFGSLMSMWPFSWYKSQCESRNKPTTCLPVDS
IMALYLSLESGKFWFPAQVYNRENGHVGFMLSCYDAQLSYDSKTDTFQARYSPFARRTIEESIHRDRLRAPPVETPAHVLHTSDCLNDLKPGDHIEIQWR
RSKEFPYGWWYAVVGHQELCDGNENRCRCRYSDTVVLEFSQYTPGSRWRQTIVNRKDHREVGNEADGFYGGIRKLYKEEEISKWKQLWPKQIFD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26850 F-box family protein (.1) Potri.016G035900
[exp]
0 1
AT1G60890 Phosphatidylinositol-4-phospha... Potri.003G019100
[exp]
2.82 0.8329
AT5G16720 Protein of unknown function, D... Potri.004G087600
[exp]
6.70 0.8166
AT5G05830 RING/FYVE/PHD zinc finger supe... Potri.011G068800
[exp]
7.81 0.8518
AT1G19430 S-adenosyl-L-methionine-depend... Potri.002G260600
[exp]
9.59 0.8434
AT1G68090 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5... Potri.010G101800
[exp]
16.30 0.8185 Pt-ANN5.1
AT2G37195 unknown protein Potri.016G090000
[exp]
16.73 0.8326
AT3G18510 unknown protein Potri.011G140300
[exp]
17.49 0.8103
AT1G04850 ubiquitin-associated (UBA)/TS-... Potri.001G316400
[exp]
21.07 0.8190
AT4G24760 alpha/beta-Hydrolases superfam... Potri.015G087100
[exp]
25.29 0.7899
AT1G15670 Galactose oxidase/kelch repeat... Potri.001G178500
[exp]
27.92 0.8074

Potri.016G035900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.