Plant FIBer expression Database

Potri.016G036000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56720 124 / 2e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G039900
[exp]
585 / 0 AT3G56720 129 / 3e-33 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038984
[exp]
249 / 3e-77 AT3G56720 129 / 7e-33 unknown protein
Lus10027280
[exp]
240 / 1e-73 AT3G56720 129 / 4e-33 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15477 SMAP Small acidic protein family
Representative CDS sequence
>Potri.016G036000.6 pacid=42809019 polypeptide=Potri.016G036000.6.p locus=Potri.016G036000 ID=Potri.016G036000.6.v4.1 annot-version=v4.1
ATGGATACCGGCGGCATTCAGTCGGAGAATGCTGAGACAAGAGTAACATTTCGTAAGCTTTTCAATGATGTGGCTAACAGGAATTATCGACGACGCCATT
CTCCTGTTAATGGATCTCCTTCTTTGGATGGAAGTCCGAAGCATGATCGTAGCTCTAGTCCGGTAGTCCCGAGGGAGGATGTTCCTAAAGCTTCACAGAG
AAGGAAGGATGAAGAGAAAGAACTGAACCGGGATTCTGGGAGGAGTCGGTATGAGAAGAATAGAGATTCGTGTAGACATTCTGATGGGTATTCTTCCAGG
AGTTCACATGGGTATTCTAGGAATGATGATTATAGTAGACGTGACAGGCGTGTGGATGATGGAGAAAGACATTATCAGGTGTCTTCCCTTTCTGATAGGG
AGTTGAAGGATGGTGAGCGTGGTAGGTCAAGGGATTATGCGCGAAATGTGGAGAAATATTCTTGTGATAGATATGATAATTCAGGGCATAGAAGGAGGGA
TAAAGAGAGAGAATCATCGGAGCATCAGAAGTTGAAAGATAAGGACTTTTCGCCTGATAGAGTTGGATCTGGTAGGAAATATACAAGCTCAGCTTCTGAA
GAGAAGGATAGGTATCGGAACAGGCGGGACAGAGATGTTTGTGATGAGAGAAGAGATCATCACAGTTCTGGAGATCATAAAAGTGATCGTTCTTCTTACT
ATGAGGAAACCCGATGGCATCAAAATGACTCTTCTGGAAGGAATGGTGGACATCGCCTTAGAGAACATTATAAGAATGACCCAGAGGAATTGAATAGTCA
GAAGGAAAAGAAGAAACATGATAACTGGGAAAATAGCAGGGGAAAAAATCGGTACAGTAAAGCACCAGGGCAGACAAGTGATGATAAATCTATTTCTGGG
AGTGAAAATCAAGAATCTCCTGCCAAAAAGCCAAAATTGTCTAGCTCTAACAAGGACCCTGATTACAATGGAGATGTTAATGAAAAGCAGCCTTCAAGTT
CATTGCTGGCCCAGGAGGTTGATAACAAGATCAATGAAGGACAGACACATGCCAATAGTTCAGAGGCTGCTAAGGACTTCGATGCTGCAAAGGTTGCTGC
TGTGAAAGCTGCTGAATTAGTTAACAGGAACCTAGTTGGCGGGGGCTTTATGTCTACCGAGCAGAAGAAGAAGCTGCTTTGGGGGAATAAAAAGTGTGCT
GCTCCGGAAGAGCCTGGTTGCCAGTGGGATACTGCTATGTTTGGCGATCGTGACAGACAAGAGAAATTCAACAAACTCATGGGTTTAAAGGGAGATGTAA
AGGTGGAGCACAAACCCGACAGTCAAGATGCGGAGAAACAAAAGGAACTCCAGATGGATCTAGAGAAACAATATACTGCTGGGCTTCGACGAAGAGATGG
CCGCACTGTTGGATTGGGTCTTTGA
AA sequence
>Potri.016G036000.6 pacid=42809019 polypeptide=Potri.016G036000.6.p locus=Potri.016G036000 ID=Potri.016G036000.6.v4.1 annot-version=v4.1
MDTGGIQSENAETRVTFRKLFNDVANRNYRRRHSPVNGSPSLDGSPKHDRSSSPVVPREDVPKASQRRKDEEKELNRDSGRSRYEKNRDSCRHSDGYSSR
SSHGYSRNDDYSRRDRRVDDGERHYQVSSLSDRELKDGERGRSRDYARNVEKYSCDRYDNSGHRRRDKERESSEHQKLKDKDFSPDRVGSGRKYTSSASE
EKDRYRNRRDRDVCDERRDHHSSGDHKSDRSSYYEETRWHQNDSSGRNGGHRLREHYKNDPEELNSQKEKKKHDNWENSRGKNRYSKAPGQTSDDKSISG
SENQESPAKKPKLSSSNKDPDYNGDVNEKQPSSSLLAQEVDNKINEGQTHANSSEAAKDFDAAKVAAVKAAELVNRNLVGGGFMSTEQKKKLLWGNKKCA
APEEPGCQWDTAMFGDRDRQEKFNKLMGLKGDVKVEHKPDSQDAEKQKELQMDLEKQYTAGLRRRDGRTVGLGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56720 unknown protein Potri.016G036000
[exp]
0 1
AT2G06050 AtOPR3, DDE1, O... DELAYED DEHISCENCE 1, oxophyto... Potri.004G212100
[exp]
4.00 0.7101
AT5G58930 Protein of unknown function (D... Potri.001G248400
[exp]
4.00 0.6992
AT3G04610 FLK flowering locus KH domain, RNA... Potri.013G043000
[exp]
6.00 0.7114
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.007G109400
[exp]
9.16 0.6782
AT5G44280 ATRING1A ARABIDOPSIS THALIANA RING 1A, ... Potri.017G013000
[exp]
11.22 0.6546
AT2G33255 Haloacid dehalogenase-like hyd... Potri.010G063700
[exp]
11.61 0.6971
AT4G17660 Protein kinase superfamily pro... Potri.002G251300
[exp]
13.26 0.6476
AT1G18485 Pentatricopeptide repeat (PPR)... Potri.015G047600
[exp]
20.78 0.7032
AT1G05810 ARA, Ara-1, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Potri.002G249500
[exp]
26.07 0.6696 RAB11.3
AT5G28850 Calcium-binding EF-hand family... Potri.013G047300
[exp]
28.84 0.5998

Potri.016G036000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.