Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80270 634 / 0 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT1G15480 605 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15590 528 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 185 / 1e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07590 158 / 1e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 150 / 4e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G02820 141 / 9e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21705 136 / 4e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 136 / 5e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 123 / 8e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039600 [exp] 1052 / 0 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.003G193600 [exp] 488 / 2e-166 AT1G80270 442 / 9e-149 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.009G030900 [exp] 174 / 2e-47 AT1G07590 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 163 / 9e-44 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 160 / 2e-42 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 158 / 7e-42 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 147 / 5e-38 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 145 / 2e-37 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G051500 [exp] 144 / 5e-37 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012112 [exp] 777 / 0 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10010430 [exp] 773 / 0 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10031004 [exp] 586 / 0 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10013047 [exp] 164 / 4e-44 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042757 [exp] 163 / 2e-43 AT1G07590 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029724 [exp] 160 / 3e-42 AT1G07590 691 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 159 / 6e-42 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042574 [exp] 154 / 4e-40 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005855 [exp] 148 / 2e-38 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016229 [exp] 143 / 3e-37 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.016G036100.1 pacid=42810132 polypeptide=Potri.016G036100.1.p locus=Potri.016G036100 ID=Potri.016G036100.1.v4.1 annot-version=v4.1 ATGCTGGCTCTTCGTCGAGCTTGCAATCCTCTCAAGTTTCGTGGATTCAGTGTTGGAACTTCCCGTGCCTGTTGTGCTAAATCAGAAATAGTATTTAGTT ACATAGAAGGCAAGGCTACGGTTGTCGAGCCTCCTCAACCTGTATCTGAGAGGCCTCGATTTTACCACAGCACAAATATTGGTTCAAAGTTCTATTTGGA GAAGCGTGGTTTCGCTTCGCAAGCTGGTGCTGAAAGCAGTGAATCAGATGAAGACTTGGAGGACGAGTTCTCTGAACTTGAAACACCAATAAGTGCCAAT GAAAGTGTGGTCAATGTAGTTCAGCTAATTTCTGAACCTGAGCTGTCCGATGATGACACCAATGATATAGGGGAACCTTCTCAGAATGCACTAGAACTAT CAGATAATGAAACAGATCCAGCTGAGAAAAGATTACCAAGGAAAAAGGCTCCCTCAGAATTGTTCAAGGCCATCATTTCTGCTCCAGGTGTTTCTGTTCA TAGTGTTCTTGACAAGTGGGTGGCAGAAGGAAGGGACTTGGACCAGTTAGAGATCTCTAATGCCATGTTCAATCTTCGCAAACGTCGACTGTTTGGGAGG GCTCTGCAGCTCTCAGAGTGGGTGGAAGCAAATAAGCGAAAAGACTTTGATGAAAGAGATTATGCTTCTCGTCTTGATTTAATTGCAAAGGTGCGTGGTC TCCAGAAGGCAGAGGTTTATATCGAGAAAATCCCAAAATCCTTAAAAGGGGAGGTGATCTACCGAACCTTGCTGGCCAACTGTGTTTCAGCTAATAATGC GAAGAAGGCAGTGGAAGTATTCAACAAAATGAAGGACCTCGAATTACCGATCACATTATTTTCTTACAACCAACTGCTGCTCCTTTACAAGAGGCATGAC AAGAAGAAAATTGCTGATGTGTTGTTATTAATGGAGAAAGAAAATGTCAAGCCTTCTCTTTTTACTTACATACTCTTAATAGACACAAAAGGCCAATCCA ATGACATAGCGGGGATGGAACAAATCGCAGAGACAATGAAGGCTGAAGGCATTGAACCTGATATCAAAACCCAAGCTATCATGGCCAGGCACTATGTATC TGGTGGCCTCAAAGAAAAAGCTGAGATTGTTTTGAAAGAGATGGAAGGGGGCAACTTAGAAGAGCATCGATGGGCTTGCCAGTTTATGCTTCCTCTATAT GGTACTCTTGGGAAGGCTGATGAAGTGAGTAGGCTTTGGAAGTTCTGTAAGAAAAGCCCCCGACTTGATGAGTGCATGGCTGCCATTGAAGCCTGGGGAC AGCTGAAGAAAATTCCTGAAGCTGAGGCAGTTTTTGAGTTGATGTCAAAAACATGGAAGAAGCTTTCTTCAAAGCATTATTCTGCACTCTTGAAGGTTTA TGCAAACAACAAGATGCTATCTAAGGGTAAAGATTTGATCAAGCAAATGGGTGATAGTGGGTGTCGCATTGGGCCATTGACATGGGATGCACTTATCAAG CTTTATGTGGAAGCAGGGGAGGTGGAAAAAGCTGACTCTATACTGAATAAGGCTGTCCAACAGAATCAGATGAAGCCAATGTTTAGTTCATATATGATTA TCATGGAGAAATATGCAAAGAAGGGTGACATACATAATGCAGAGAAAATGTTTCACCGGATGAGACAAGCTGGTTATCAGGCTCGATCAAAGCAATTTCA GACACTAATCCAGGCATATATAAATGCCAAGGCTCCATGTTATGGCATGAGGGAGAGACTGAAGGCGGATGGTTTATTCGCCAACAAGGCCATGGCAGCC CAACTTTCTCAGGTTGATGCATTTAAGAGGACAGTAGTTTCCGATTTGCTTGACTGA
AA sequence Show only first row Show all	>Potri.016G036100.1 pacid=42810132 polypeptide=Potri.016G036100.1.p locus=Potri.016G036100 ID=Potri.016G036100.1.v4.1 annot-version=v4.1 MLALRRACNPLKFRGFSVGTSRACCAKSEIVFSYIEGKATVVEPPQPVSERPRFYHSTNIGSKFYLEKRGFASQAGAESSESDEDLEDEFSELETPISAN ESVVNVVQLISEPELSDDDTNDIGEPSQNALELSDNETDPAEKRLPRKKAPSELFKAIISAPGVSVHSVLDKWVAEGRDLDQLEISNAMFNLRKRRLFGR ALQLSEWVEANKRKDFDERDYASRLDLIAKVRGLQKAEVYIEKIPKSLKGEVIYRTLLANCVSANNAKKAVEVFNKMKDLELPITLFSYNQLLLLYKRHD KKKIADVLLLMEKENVKPSLFTYILLIDTKGQSNDIAGMEQIAETMKAEGIEPDIKTQAIMARHYVSGGLKEKAEIVLKEMEGGNLEEHRWACQFMLPLY GTLGKADEVSRLWKFCKKSPRLDECMAAIEAWGQLKKIPEAEAVFELMSKTWKKLSSKHYSALLKVYANNKMLSKGKDLIKQMGDSGCRIGPLTWDALIK LYVEAGEVEKADSILNKAVQQNQMKPMFSSYMIIMEKYAKKGDIHNAEKMFHRMRQAGYQARSKQFQTLIQAYINAKAPCYGMRERLKADGLFANKAMAA QLSQVDAFKRTVVSDLLD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.016G036100 [exp]	0	1
AT1G15870			Mitochondrial glycoprotein fam...		Potri.001G047600 [exp]	1.73	0.8807
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319800 [exp]	2.00	0.8739
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	2.82	0.8335
AT1G56110		NOP56	homolog of nucleolar protein N...		Potri.012G095400 [exp]	3.87	0.8440	NOP56.2
AT5G27395			Mitochondrial inner membrane t...		Potri.013G026700 [exp]	5.19	0.8663
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	5.65	0.8629
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.003G162300 [exp]	6.00	0.8313	GLYRS.2
AT5G23300		PYRD	pyrimidine d (.1)		Potri.005G089700 [exp]	7.74	0.8265
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	9.79	0.8396
AT5G02050			Mitochondrial glycoprotein fam...		Potri.016G102200 [exp]	10.39	0.8331	SDH4.2

Compare expression of checked genes

Potri.016G036100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.