Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04130 1080 / 0 GYRB2 DNA GYRASE B2 (.1.2) AT3G10270 1058 / 0 GYRB1 DNA GYRASE B1 (.1) AT5G04110 276 / 4e-84 GYRB3 DNA GYRASE B3 (.1) AT3G23890 96 / 6e-20 ATTOPII, TOPII topoisomerase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039400 [exp] 1287 / 0 AT5G04130 1025 / 0.0 DNA GYRASE B2 (.1.2) Potri.009G058900 [exp] 120 / 1e-27 AT3G23890 1691 / 0.0 topoisomerase II (.1.2) Potri.001G264000 [exp] 115 / 3e-26 AT3G23890 1716 / 0.0 topoisomerase II (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010428 [exp] 1137 / 0 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Lus10012114 [exp] 1130 / 0 AT5G04130 1060 / 0.0 DNA GYRASE B2 (.1.2) Lus10019720 [exp] 102 / 5e-22 AT3G23890 1685 / 0.0 topoisomerase II (.1.2) Lus10016397 [exp] 99 / 1e-20 AT3G23890 1682 / 0.0 topoisomerase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00204 [poplar] [flax] DNA_gyraseB DNA gyrase B CL0329 [poplar] [flax] PF00986 [poplar] [flax] DNA_gyraseB_C DNA gyrase B subunit, carboxyl terminus CL0413 [poplar] [flax] Toprim-like PF01751 [poplar] [flax] Toprim Toprim domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.016G036200.3 pacid=42809570 polypeptide=Potri.016G036200.3.p locus=Potri.016G036200 ID=Potri.016G036200.3.v4.1 annot-version=v4.1 ATGGCGCGTCTTCTTCTAAAACCTCATAACAGCAGCAGACACTATCTCTCTTTAATTCGAGCTTCCATGGCTTCTTCTTCTTTTTCTTGCTCTCACTCTT TCTCTTTTCTCTCCCGCCCCTCAGTCTCCTTCAACTCAAGGGTGAGTTTTCCAGCGAGGAGGGTTCCAAGTAGATTTTTGGTGCAAAATGGGGTTTCACC AAGAGCTTTCATGTCTACTAGCGTGGCAACTGAATCGCAGCAAGAAAGCGCGGGTTCGAAAGCTTATGGGTCTGATCAAATCCAGGTGTTGAAAGGATTA GAGCCTGTGAGGAAAAGGCCAGGGATGTACATTGGAAGTACAGGACCACGTGGTTTGCACCATTTGGTTTATGAGATATTAGATAATGCTGTTGACGAGG CCCAAGCAGGATACGCTTCAACAATAAATGTTGTTCTACATTCGGATAATTCTGTTAGCATTACTGACAATGGGCGTGGGATTCCTACTGACTTGCATCC AGAGACAAAGAAATCTGCCTTGGAGACTGTGTTAACGGTCTTGCATGCTGGTGGAAAATTTGGTGGTTCTAACAGTGGATATCGTGTCTCTGGTGGACTC CATGGTGTGGGTTTGTCTGTTGTCAATGCTTTGTCTGAGGAATTAGAAGTTACAGTTTGGCGTGATGGAAAGCAATACCAACAGAAATATTCTCGTGGAA ACCCTGTAACAACTCTAACATGCCATGAACTTCCAGTAGAATCAAAGGAACGTAGAGGCACTCACATCAAATTTTGGCCTGACAAAGAAGTATTCACCAC TGAGATTCAGTTTGACTACCACACGATAGCCGGACGGGTTAGGGAGCTTGCATTTTTAAACCCAAAGCTGACTATTTCTTTGCAAAAAGAGGATAATGAT CCGGAGAAGAATCAGTTCGATGAACATTTCTATGCAGGTGGATTGGTTGAATATGTGAATTGGCTAAATACTGATAAGAAACCGCTCCATGATGTTCTGG GTTTCAGAAAAGAAGTAGATGGAATTGCAATTGATATGGCTCTCCAATGGTGTTCTGATGCTTACTCAGATACAATCCTGGGATATGCTAATAGCATACG CACTGTTGATGGTGGCACGCATATAGATGGTGCAAAGGCTTCATTAACAAGAACTCTCAATAACCTGGGGAAAAAGTCAAAGGTCATTAAGGATAAGGAT ATGAGTTTAAGCGGTGAACATGTAAGGGAGGGATTGACATGTATTATCTCTGTCAAAGTTCCAAGCCCGGAGTTTGAAGGTCAAACTAAGACAAGGTTGG GAAATCCGGAGGTGCGGAAAGTGGTAGAGCAATCCATTCAGGAGTATCTTACTGAATATTTGGAGTTGCATCCTGATGCTCTGGATTCAATCCTGTCAAA GTCTCTAAATGCTCTTAAGGCAGCTTTGGCAGCAAAGAGGGCTAGGGAATTGGTGAGACAAAAAAGTGTATTGAAATCATCATCTCTTCCAGGAAAACTG GCTGATTGCTCTTCTACAGATCCTGAAGAATCTGAAATTTTTATAGTTGAAGGAGATTCAGCTGGAGGGAGTGCCAAACAGGGCCGTGATCGACGCTTTC AGGCTATTCTCCCTTTGAGGGGTAAAATTCTAAATATAGAAAGAAGAGACGAGGCAGCAATGTACAAGAATGAAGAGATCCAGAATCTTATACTTGGTCT TGGACTTGGAGTGAAGGGGGAGGATTTTAAAAAGGATGCTCTACGTTATCATAAGATCATCATCTTAACAGATGCTGATGTGGACGGTGCTCACATCCGA ACTCTTCTGTTGACTTTCTTCTTTAGATATCAGAGAGCTTTATTTGATGAAGGCTGCATTTATGTTGGTGTGCCACCCCTCTATAAGGTTGAGAGGGGAA AGCAGGCCTACTATTGTTTTGATGACGCAGAACTCAAAAAGATTCAAAGGTCATTCCCTCAAAATGCATCATATAACATTCAAAGGTTCAAAGGCTTGGG GGAGATGATGCCTGCACAACTGTGGGAAACAACAATGGATCCAGAGCGAAGGGTGCTCAAACAATTAGTAGTTGAAGATGCAGCAGAGGCCAATATTGTC TTTTCATCGCTAATGGGTACCCGGGTGGATTTTCGCAAGGAACTTATTCAGAATGCGGCAAGCATGATTAACGTTGATCATTTGGATATTTGA
AA sequence Show only first row Show all	>Potri.016G036200.3 pacid=42809570 polypeptide=Potri.016G036200.3.p locus=Potri.016G036200 ID=Potri.016G036200.3.v4.1 annot-version=v4.1 MARLLLKPHNSSRHYLSLIRASMASSSFSCSHSFSFLSRPSVSFNSRVSFPARRVPSRFLVQNGVSPRAFMSTSVATESQQESAGSKAYGSDQIQVLKGL EPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASTINVVLHSDNSVSITDNGRGIPTDLHPETKKSALETVLTVLHAGGKFGGSNSGYRVSGGL HGVGLSVVNALSEELEVTVWRDGKQYQQKYSRGNPVTTLTCHELPVESKERRGTHIKFWPDKEVFTTEIQFDYHTIAGRVRELAFLNPKLTISLQKEDND PEKNQFDEHFYAGGLVEYVNWLNTDKKPLHDVLGFRKEVDGIAIDMALQWCSDAYSDTILGYANSIRTVDGGTHIDGAKASLTRTLNNLGKKSKVIKDKD MSLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQSIQEYLTEYLELHPDALDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKL ADCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIR TLLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQAYYCFDDAELKKIQRSFPQNASYNIQRFKGLGEMMPAQLWETTMDPERRVLKQLVVEDAAEANIV FSSLMGTRVDFRKELIQNAASMINVDHLDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.016G036200 [exp]	0	1
AT1G01970			Tetratricopeptide repeat (TPR)...		Potri.014G070500 [exp]	3.46	0.9582
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Potri.018G024300 [exp]	5.65	0.9586
AT5G52030			TraB family protein (.1.2)		Potri.012G133900 [exp]	6.24	0.9605
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Potri.007G098700 [exp]	7.21	0.9439
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	10.86	0.9613	RNP1.2
AT4G21770			Pseudouridine synthase family ...		Potri.004G019100 [exp]	10.95	0.9313
AT1G14030			Rubisco methyltransferase fami...		Potri.008G090500 [exp]	12.44	0.9583	RBCMT.1
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Potri.005G209900 [exp]	13.85	0.9519
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	15.74	0.9562
AT5G61490			Uncharacterised conserved prot...		Potri.014G057200 [exp]	16.73	0.9378

Compare expression of checked genes

Potri.016G036200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.