Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68060 618 / 0 ATMAP70-1 microtubule-associated proteins 70-1 (.1) AT1G24764 613 / 0 ATMAP70-2 microtubule-associated proteins 70-2 (.1) AT1G14840 599 / 0 ATMAP70-4 microtubule-associated proteins 70-4 (.1.2) AT2G01750 590 / 0 ATMAP70-3 microtubule-associated proteins 70-3 (.1.2) AT4G17220 283 / 3e-88 ATMAP70-5 microtubule-associated proteins 70-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039200 [exp] 823 / 0 AT1G24764 648 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.010G106100 [exp] 630 / 0 AT1G68060 751 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.008G135100 [exp] 624 / 0 AT1G24764 804 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.006G018000 [exp] 355 / 2e-115 AT4G17220 464 / 5e-159 microtubule-associated proteins 70-5 (.1) Potri.016G006900 [exp] 355 / 3e-115 AT4G17220 453 / 1e-154 microtubule-associated proteins 70-5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013238 [exp] 622 / 0 AT1G24764 910 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10030758 [exp] 621 / 0 AT1G24764 918 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10019171 [exp] 371 / 4e-123 AT1G24764 546 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10038790 [exp] 358 / 1e-116 AT4G17220 473 / 5e-163 microtubule-associated proteins 70-5 (.1) Lus10000642 [exp] 246 / 5e-76 AT1G24764 403 / 1e-136 microtubule-associated proteins 70-2 (.1) Lus10003908 [exp] 75 / 4e-16 AT4G17220 98 / 3e-25 microtubule-associated proteins 70-5 (.1) Lus10039069 [exp] 73 / 1e-15 AT1G24764 71 / 8e-16 microtubule-associated proteins 70-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07058 [poplar] [flax] MAP70 Microtubule-associated protein 70
Representative CDS sequence Show only first row Show all	>Potri.016G036300.1 pacid=42809674 polypeptide=Potri.016G036300.1.p locus=Potri.016G036300 ID=Potri.016G036300.1.v4.1 annot-version=v4.1 ATGGCAAGTAACCACCACCGCCACATTATCAGCAACGGAGAAGCCGATCCTGTTCCGAAGCCGACACTTACAACGTCGGCTTCGTTCAAGTCACGGAGGC TGGTCAAGCAAAATGCGAACAACAACTCGAATAGTATTTCAGCTCTCTCCCGAGCCGGCTCTGATGTCGATGAAATCATCACTCTCTTACACGGCTCCGA TCCCGTTCGCGTCGAACTTAACCGCCTCGAAAACGAACTTCGAGATAAAGATAGGGAATTGGGAGATGCACTTGCGGAAATCAAATCGTTGAAGAATTCG GAGCGATCGAAAGAGAAGGCAGTCGAAGAGCTTACTGATGAGCTAGATAAAGTGGATGAAAAGCTTAAAGCTACTGAAGCTCTTTTGGAAAACAAGAACC TTGAGATTAAGAAAATAAATGATGAGAAAAAAGCAGCTTTGGCTGCACAATTTGCTGCAGAAGCCACGCTACGAAGAGTCCATGCTGCTCAAAAAGATGA CGAAATGCCTCCTATTGAGGCCATCATTGCTCCACTGGAGGCAGAACTTAAGCTGGCCAGGCTTGAGGTAGCAAAATTGCAAGATGACAATAAAGCACTT GATCGGCTCACAAAAGCTAAGGAAGCTGCTCTACTTGAGGCTGAGAGAACTGTTCAGATTGCTCTGGTGAAAGCATCCCTGGTTGATGACCTGCAAAACA AAAATCAAGAGCTCATGAAGCAGATTGAGATATGCCAGGAGGAGAACAAAATCCTAGACAAAATGCATAGGCAAAAGGTCGCTGAAGTTGAAAAGCTGAT GCAAACTGTTCGTGAGCTTGAGGAGGCTGTCTTGGCTGGAGGTGCTGCTGCTAATGCCGTGCGAGATTACCAGCGAAAAGTACAAGAGATGAATGGGGAG AGAAAAACTTTGGAACGGGAAGTAGCTCGTGCAAAGGTCTCTGCGAACAGGGTAGCCACTGTGGTTGCAAACGAGTGGAAAGACGGTAATGACAAAGTTA TGCCTGTGAAGCAATGGCTTGAAGAAAGAAGATTTTTTCAGGGGGAAATGCAACAACTTCGTGATAAATTGGCAGTTGCAGAGCGTGCTGCCAAGGCAGA AGCACAATTAAAAGAAAAATACCAAATAAGATTCAGGGTTTTGGAGGAAAGGCTTAAAGCACCAAATAGTATTTCCCGTGAAGGAAGAAACACAAGCAAC GGGCCTTCAAGACGTCAATCTCTTGGTGGAGTGGAGAATTTTTCCAGATTGTCCTCCAATGGTTATTTATCTAGGAAAGCCCCAAATTCACAAGCTGGTT CTCTACGGCCCAACAATGCTGTCACATTATTGAAACATGCTAAGATGTCATCAAGATCATTTGATGGAGGTAGTAGATCACTAGATGATAAGTTGCTTGT AGGTGCAGCTGGTAAAGATAATGGACCTCCGAAAGCCTCTGATCAGACTCATAGTACTGAGAGAACTGAGACTGGAGAGATTGAGAATGAAACATCAATT GAAAAATCAAAATCAGAGCATGAAGATTACGTTTCAGGAGTTTTGTATGATATGTTGCAGAAAGAGGTTATAACTCTGAGGAGAGCCTGCCATGAAAAAG ACCAAAGCCTTAAGGACAAGGATGATGCAATTGAGATGTTGGCAAAGAAGGTCGATACATTGAACAAAGCAATGGAAATTGAGGGGAAAAAGATGCGAAG GGAAGTCGCTGCAATGGAAAAAGAAGTTGCTGCTATGCGAGTTAGCAAGGAGCATGATCACAGGACACGACGCGGCAGTGCTCCCAGGGCTTCTCAGTTA CTCTCCTCAAGGAGTGCAAGAAATTCTTAG
AA sequence Show only first row Show all	>Potri.016G036300.1 pacid=42809674 polypeptide=Potri.016G036300.1.p locus=Potri.016G036300 ID=Potri.016G036300.1.v4.1 annot-version=v4.1 MASNHHRHIISNGEADPVPKPTLTTSASFKSRRLVKQNANNNSNSISALSRAGSDVDEIITLLHGSDPVRVELNRLENELRDKDRELGDALAEIKSLKNS ERSKEKAVEELTDELDKVDEKLKATEALLENKNLEIKKINDEKKAALAAQFAAEATLRRVHAAQKDDEMPPIEAIIAPLEAELKLARLEVAKLQDDNKAL DRLTKAKEAALLEAERTVQIALVKASLVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLMQTVRELEEAVLAGGAAANAVRDYQRKVQEMNGE RKTLEREVARAKVSANRVATVVANEWKDGNDKVMPVKQWLEERRFFQGEMQQLRDKLAVAERAAKAEAQLKEKYQIRFRVLEERLKAPNSISREGRNTSN GPSRRQSLGGVENFSRLSSNGYLSRKAPNSQAGSLRPNNAVTLLKHAKMSSRSFDGGSRSLDDKLLVGAAGKDNGPPKASDQTHSTERTETGEIENETSI EKSKSEHEDYVSGVLYDMLQKEVITLRRACHEKDQSLKDKDDAIEMLAKKVDTLNKAMEIEGKKMRREVAAMEKEVAAMRVSKEHDHRTRRGSAPRASQL LSSRSARNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68060		ATMAP70-1	microtubule-associated protein...		Potri.016G036300 [exp]	0	1
AT4G22190			unknown protein		Potri.006G282000 [exp]	4.47	0.7033
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	19.59	0.6669
AT4G22190			unknown protein		Potri.011G015500 [exp]	21.35	0.6991
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	26.36	0.6685
AT5G65420		CYCD4;1	CYCLIN D4;1 (.1.2.3)		Potri.005G157800 [exp]	27.64	0.6914
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.013G089900 [exp]	44.27	0.6293
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070000 [exp]	60.48	0.6259
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	69.06	0.6558
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	77.92	0.6069
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.001G129000 [exp]	104.16	0.5903

Compare expression of checked genes

Potri.016G036300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.