Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GLU1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04140 2813 / 0 GLS1, GLUS, GLU1, FD-GOGAT FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) AT2G41220 2754 / 0 GLU2 glutamate synthase 2 (.1) AT5G53460 1204 / 0 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G038400 [exp] 3128 / 0 AT5G04140 2831 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.012G011700 [exp] 1219 / 0 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.015G017500 [exp] 1207 / 0 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010457 [exp] 2845 / 0 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10003820 [exp] 1457 / 0 AT2G41220 1401 / 0.0 glutamate synthase 2 (.1) Lus10000390 [exp] 1197 / 0 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019021 [exp] 618 / 0 AT5G53460 1273 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019020 [exp] 207 / 4e-55 AT5G53460 1280 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF00310 [poplar] [flax] GATase_2 Glutamine amidotransferases class-II CL0052 [poplar] [flax] PF01493 [poplar] [flax] GXGXG GXGXG motif CL0036 [poplar] [flax] TIM_barrel PF01645 [poplar] [flax] Glu_synthase Conserved region in glutamate synthase CL0036 [poplar] [flax] TIM_barrel PF04898 [poplar] [flax] Glu_syn_central Glutamate synthase central domain
Representative CDS sequence Show only first row Show all	>Potri.016G036900.12 pacid=42809656 polypeptide=Potri.016G036900.12.p locus=Potri.016G036900 ID=Potri.016G036900.12.v4.1 annot-version=v4.1 ATGGCTTCTCTTCAATCACCAGTAGTCTCCCCGATTCCGCAACTCGTCAATGCTACAAGACCGAACTCACTCAATAAGAATTTGTTATTTGTTGATTTCG TTGGACTCTACTGTAAATCGAAGAGAACTAGAAGGAGAATAGGACTTTCTTCGAGTTTCTCTCGATTTTCAATTAAAAAGAACTCCAGTCCGGTCCACGC CATTCTCAGTGTTGACCGTCAAAACATCTCTCCGCAGTATCCTCCTCCTCCTGATTTGAAACCGCAGGTAGCAAACTTGGAGGATATAATATCAGAAAGA GGAGCATGTGGAGTTGGATTTATTGCGAATTTGGAAAACAAGCCGTCCCATGCGATTGTCAAGGATGCACTTACGGCTCTTGGTTGTATGGAACATCGTG GAGGCTGTGGAGCAGATAATGACTCTGGTGATGGTTCAGGACTGATGACTTCGATTCCGTGGGAGTTATTTGATAAATGGGCTGAGAGTGAAGGGATTGG TTCTTTTGATAAGTCGCATACTGGTGTTGGGATGGTTTTTTTCCCTAAAGATGATAACCTCGTGAAAGAAGCCAAAAAAGCAATTGTAAATATTTTTGAA CAAGAGGGCCTTGAGGTGCTTGGATGGAGGTCCGTTCCTGTAAATACGTCCGTAGTTGGTTTTTATGCAAAAGAAACCATGCCCAACATCCAACAAGTAT TTGTTAAAGTTATTAAAGAAGAGAATGTTGACGACATTGAACGTGAACTGTATATCTGCCGGAAGCTGATTGAAAGGGCGGCGAACTCAGCAAATTGGGG GAATGAGCTTTATTTCTGCTCTTTGTCTAATCAAACAATTGTTTATAAGGGAATGCTTCGTTCTGAAGTTCTTGGGATGTTTTATTCTGACCTTCAGAAT GATATCTACAAATCACCTTTCGCTATTTATCATCGAAGGTATAGCACAAATACTAGTCCCAGATGGCCTCTTGCTCAACCAATGCGGTTTCTTGGTCATA ATGGAGAGATTAACACCATACAGGGTAACCTGAATTGGATGCAATCTCGAGAAACCTCATTGAAATCTTCGGTTTGGCATGGTCGTGAAAATGAAATTCG TCCTTATGGGAACCCAAAGGCATCAGATTCAGCAAATCTTGACAGTGCAGCCGAACTGTTAATAAGGAGTGGACGCGCTCCTGAGGAGGCTTTGATGATT CTTGTCCCTGAGGCATATAAAAATCATCCAACTCTGACAATCAAATATCCTGAGGTTGTAGATTTTTATGATTATTACAAGGGTCAGATGGAAGCTTGGG ATGGACCTGCTTTACTCTTATTCAGTGATGGAAAGACAGTTGGGGCTTGTCTCGATAGGAATGGACTCCGTCCTGCTAGATATTGGCGGACAGTGGACAA TTTTGTATATGTTGCATCTGAGGTTGGGGTTGTACCAATGGATGAATCAAAAGTAACGATGAAAGGCCGTCTAGGTCCCGGAATGATGATAGCTGTAGAT TTGCCTGGTGGCCAGGTTTATGAGAACACCGAAGTAAAAAAGCGAGTAGCACTGTTAAATCCATACGGAAAATGGGTCAAGGAAAACCTGCGATCCTTGA AGCCTGCAAACTTCCTCTCCGCAACAGTTATGGACAATGAAGTAACTTTAAACCGCCAACAGGCATTCGGCTACTCCAGCGAGGATGTCCAAATGGTTAT TGAGAATATGGCTTCGCAAGGGAAGGAGCCTACATTTTGCATGGGAGATGATATTCCACTGGCGATATTGTCTCAAAAGCCGCATATGCTTTATGACTAT TTTAAACAACGGTTTGCACAGGTTACAAATCCAGCTATAGACCCTCTCAGAGAAGGATTAGTTATGTCTCTTGAAGTCAATATTGGAAAGCGAAGAAACA TCTTGGAAGTTGGACCAGAAAATGCTTCACAGGTTATCTTGTCTAGTCCTGTACTAAATGAAGGAGAGCTTGAATTGTTACTGAAGGATCCCTACTTAAA ACCTCAAGTTTTACCAACCTTTTTTGATATACGCAAAGGGGTTGAGGGTTCTTTGGAGAAAACATTAATTAAGCTTTGTGAGGCAGCTGATGAAGCTGTT AGAAATGGTTCCCAATTACTTGTTCTCTCCGACCGATCTGATGAGCTGGAACCCACTCGGCCTGCAATTCCAATTCTTCTTGCTGTTGGTGCTGTTCATC AGCATCTTATTCAGAATGGTTTGCGAATGTCAACTTCAATTGTAGCTGACACTGCTCAGTGCTTTAGCACTCATCAGTTTGCCTGTTTGATTGGATATGG TGCTAGTGCAATATGTCCGTACTTGGCACTGGAAACATGTCGGCAGTGGCGCCTGAATAAAAGAACTGTGAATCTGATGATGAATGGCAAGATGCCTACT GTAACAATTGAACAAGCTCAAAAGAATTTTTGCAAGGCAGTTAAATCTGGTCTTCTCAAAATTCTTTCTAAGATGGGCATCTCATTGCTTTCAAGTTATT GTGGTGCGCAGATATTTGAGATTTATGGATTGGGGAAGGAGATTGTTGATCTAGCATTCTGTGGCAGTGTTTCAAATATTGGTGGAGCAACTTTTGATGA GTTGGCAAGGGAGACGTTGTCTTTCTGGGTGAAAGCTTTCTCCCAGGCTACAGCTAAAAGACTGGAAAATTATGGATTTATACAATTCAGACCTGGAGGG GAATATCATGGAAACAATCCAGAGATGTCAAAGCTGCTTCACAAAGCTGTTCGCCAAAAGAGTGAAAATGCATTTTCTATTTATCAGCAGCATTTGTCTA ACCGGCCTGTGAATGTTCTTCGTGATCTTCTTGAGTTCAAAAGTGATCGTGCTCCAATACCCGTGGGAAAGGTTGAACCTGCCACATCTATTGTTCAACG GTTTTGCACTGGTGGGATGTCGCTTGGAGCTATTTCTAGAGAAACTCATGAAGCAATTGCCATTGCTATGAACAGATTAGGTGGAAAATCTAATTCAGGG GAAGGTGGTGAGGATCCTATTCGCTGGAGCCCACTTACTGATGTTGTTGATGGGTACTCTCCTACGTTACCACATCTTAAAGGTCTTCAAAATGGTGATA CTGCTACCAGCGCTATTAAACAGGTTGCTTCAGGACGTTTTGGTGTCACTCCAACATTCTTGGTCAATGCTGATCAGTTAGAAATCAAAATTGCACAAGG TGCCAAGCCTGGTGAAGGTGGCCAGTTGCCCGGGAAGAAAGTCAGTGCATACATTGCAAGGCTGAGAAATTCAAAACCTGGGGTTCCGCTTATATCTCCA CCCCCACACCATGACATTTATTCCATTGAAGATCTTGCGCAATTGATCTATGACCTTCATCAGGTCAATCCTAAGGCTAAGGTTTCTGTAAAGCTTGTGG CAGAAGCTGGTATTGGCACAGTTGCATCTGGGGTAGCAAAGGGTAATGCTGATATTATACAGATATCAGGGCATGATGGTGGAACTGGAGCTAGCCCCAT AAGTTCCATTAAGCATGCTGGTGGACCTTGGGAACTTGGACTCACAGAATCCCATCAGACTCTCATTGAGAATGGGCTCAGAGAAAGAGTGATCCTTAGG GTTGATGGGGGCTTCAAAAGCGGAGTTGATGTCATGATGGCTGCAGTAATGGGTGCCGATGAGTATGGATTTGGTTCCGTTGCAATGATTGCTACGGGAT GTGTAATGGCCCGCATTTGTCACACTAATAACTGCCCTGTTGGTGTTGCCAGCCAGAGAGAAGAACTACGTGCTCGGTTTCCTGGCATCCCTGGTGATCT TGTTAATTTCTTTTTATATGTTGCTGAGGAGATAAGAGGCATGCTGGCACAATTGGGTTATCAGAAGTTAGATGATATCATTGGGCATACAGATTTGTTA AGACCACGAGATATATCTCTTGTCAAAACTCAGCATCTTGATCTCAGTTGTATCATGTCGAGTGTAGGCTTACCAAAACTGAGAAGTACTGATATCAGGA ATCAAGATGTTCACACCAATGGTCCTGTTTTAGATGATGTTGTTCTAGCAGATCCAGAGATTCTAGATGCTATTAATAATGAAAAAGTTGTCAATAAAAC CATAAAAATATACAATGTGGACCGGGCTGTTTGTGGGCGTATAGCTGGTGTGGTTGCAAAGAAATATGGCGACACTGGTTTTGCTGGGCAGCTGAACATA ACGTTTACCGGGAGTGCAGGGCAGTCGTTTGCATGCTTTTTGACACCTGGAATGAACATTCGCCTAATAGGAGAGGCTAATGATTACGTGGGGAAGGGTA TGGCTGGAGGAGAATTGGTCGTAACTCCTGTGGAGAACACTGGATTTGTTCCTGAGGATGCAGCTATTGTCGGGAATACTTGCTTGTATGGGGCTACAGG TGGCCAAGTATTTGTCAGAGGGAAAGCTGGGGAGCGGTTTGCTGTCAGAAACTCACTTGCTCAAGCTGTAGTTGAAGGCACTGGAGACCATTGTTGTGAA TACATGACTGGTGGTTGTGTGGTGGTACTTGGAAAAGTGGGTAGGAATGTAGCTGCTGGGATGACTGGAGGTTTGGCTTACATTCTTGATGAGGATGACA CTTTGATGCCCAAGGTAAATAAAGAGATAGTGAAGGTCCAAAGAGTAACTGCATCTGTTGGCCAGATGCAGCTAAAGAGCCTTATTGAAGCTCACGTTGA AAAAACCGGGAGCAGCAAAGGCGCAGCTATCCTGAAGGAGTGGGACACAAATCTACCACTCTTTTGGCAGCTAGTACCACCCAGTGAAGAAGACACCCCA GAGGCTTGTGCAGCATACGAGGCAAACAGTGCTGGGCAAGTGACATCATTGCAATCTGCATAA
AA sequence Show only first row Show all	>Potri.016G036900.12 pacid=42809656 polypeptide=Potri.016G036900.12.p locus=Potri.016G036900 ID=Potri.016G036900.12.v4.1 annot-version=v4.1 MASLQSPVVSPIPQLVNATRPNSLNKNLLFVDFVGLYCKSKRTRRRIGLSSSFSRFSIKKNSSPVHAILSVDRQNISPQYPPPPDLKPQVANLEDIISER GACGVGFIANLENKPSHAIVKDALTALGCMEHRGGCGADNDSGDGSGLMTSIPWELFDKWAESEGIGSFDKSHTGVGMVFFPKDDNLVKEAKKAIVNIFE QEGLEVLGWRSVPVNTSVVGFYAKETMPNIQQVFVKVIKEENVDDIERELYICRKLIERAANSANWGNELYFCSLSNQTIVYKGMLRSEVLGMFYSDLQN DIYKSPFAIYHRRYSTNTSPRWPLAQPMRFLGHNGEINTIQGNLNWMQSRETSLKSSVWHGRENEIRPYGNPKASDSANLDSAAELLIRSGRAPEEALMI LVPEAYKNHPTLTIKYPEVVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTVDNFVYVASEVGVVPMDESKVTMKGRLGPGMMIAVD LPGGQVYENTEVKKRVALLNPYGKWVKENLRSLKPANFLSATVMDNEVTLNRQQAFGYSSEDVQMVIENMASQGKEPTFCMGDDIPLAILSQKPHMLYDY FKQRFAQVTNPAIDPLREGLVMSLEVNIGKRRNILEVGPENASQVILSSPVLNEGELELLLKDPYLKPQVLPTFFDIRKGVEGSLEKTLIKLCEAADEAV RNGSQLLVLSDRSDELEPTRPAIPILLAVGAVHQHLIQNGLRMSTSIVADTAQCFSTHQFACLIGYGASAICPYLALETCRQWRLNKRTVNLMMNGKMPT VTIEQAQKNFCKAVKSGLLKILSKMGISLLSSYCGAQIFEIYGLGKEIVDLAFCGSVSNIGGATFDELARETLSFWVKAFSQATAKRLENYGFIQFRPGG EYHGNNPEMSKLLHKAVRQKSENAFSIYQQHLSNRPVNVLRDLLEFKSDRAPIPVGKVEPATSIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSG EGGEDPIRWSPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLVNADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISP PPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLIENGLRERVILR VDGGFKSGVDVMMAAVMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGIPGDLVNFFLYVAEEIRGMLAQLGYQKLDDIIGHTDLL RPRDISLVKTQHLDLSCIMSSVGLPKLRSTDIRNQDVHTNGPVLDDVVLADPEILDAINNEKVVNKTIKIYNVDRAVCGRIAGVVAKKYGDTGFAGQLNI TFTGSAGQSFACFLTPGMNIRLIGEANDYVGKGMAGGELVVTPVENTGFVPEDAAIVGNTCLYGATGGQVFVRGKAGERFAVRNSLAQAVVEGTGDHCCE YMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDDTLMPKVNKEIVKVQRVTASVGQMQLKSLIEAHVEKTGSSKGAAILKEWDTNLPLFWQLVPPSEEDTP EACAAYEANSAGQVTSLQSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.016G036900 [exp]	0	1	Pt-GLU1.1
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.001G113000 [exp]	2.00	0.9694
AT5G19500			Tryptophan/tyrosine permease (...		Potri.010G221900 [exp]	2.82	0.9518
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G002300 [exp]	3.46	0.9633
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	4.69	0.9667
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	6.00	0.9578
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.004G230800 [exp]	10.00	0.9419
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Potri.009G141300 [exp]	10.00	0.9615
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456300 [exp]	14.49	0.9334
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.011G140100 [exp]	14.49	0.9554
AT1G70820			phosphoglucomutase, putative /...		Potri.008G131400 [exp]	16.88	0.9385

Compare expression of checked genes

Potri.016G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.