Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ORG2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56970 162 / 9e-49 bHLH ORG2, bHLH038 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56980 126 / 7e-35 bHLH ORG3, bHLH039 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 121 / 3e-33 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41240 108 / 2e-28 bHLH bHLH100 basic helix-loop-helix protein 100 (.1.2) AT1G71200 50 / 3e-07 bHLH bHLH160 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 47 / 2e-06 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G20970 46 / 6e-06 bHLH bHLH162 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G56960 45 / 3e-05 bHLH bHLH041 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 44 / 6e-05 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G09820 42 / 0.0003 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G037600 [exp] 312 / 8e-108 AT3G56970 184 / 9e-58 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037200 [exp] 266 / 8e-90 AT3G56970 168 / 2e-51 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G148800 [exp] 54 / 4e-08 AT5G56960 204 / 4e-59 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G113400 [exp] 46 / 7e-06 AT4G25410 124 / 6e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G134300 [exp] 45 / 2e-05 AT5G51780 143 / 1e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G132000 [exp] 44 / 6e-05 AT5G51790 154 / 6e-47 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G066500 [exp] 41 / 0.0005 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039006 [exp] 110 / 1e-28 AT3G56970 142 / 1e-40 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027300 [exp] 108 / 8e-28 AT3G56970 139 / 2e-39 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010453 [exp] 91 / 2e-21 AT3G56970 126 / 8e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003823 [exp] 75 / 2e-15 AT3G56970 129 / 1e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 48 / 4e-06 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10017152 [exp] 48 / 4e-06 AT5G56960 196 / 4e-56 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10011172 [exp] 45 / 8e-06 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031677 [exp] 46 / 1e-05 AT5G51780 143 / 2e-42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027396 [exp] 45 / 2e-05 AT4G25400 89 / 6e-22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10027394 [exp] 44 / 6e-05 AT5G51780 149 / 9e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G037300.1 pacid=42810084 polypeptide=Potri.016G037300.1.p locus=Potri.016G037300 ID=Potri.016G037300.1.v4.1 annot-version=v4.1 ATGTTAGAAGAATTATCTCCCATCAGTTTGTTCTCAACATTTGGATGGCCCTTGGAGGAAGCCATAAGCCATGAACAGCTCTACAGCTTTAGAGATGGTG AAACTCCAGAGTCATTTACTCACTTCCCTCCATCTCAGCCAGATGTAAGACAGCTTGATCGCTCCACATCATTCACGGCCCACAGTGGAAGCGGTGACCC TAGCATGGCTAAGAAGCTTAACCACAACGCTAGCGAACGTGACCGTCGCAAAAAGATCAACAGTTTGTATTCTTCACTCCGTTCACTACTTCCTGCAGCC GATCAAAGGAAGAAATTAAGCATACCGTATACAGTTTCACGTGTGCTTGTATACATACCAAAACTTCAACAACAAGTGGAGAGACTGATTCAAAGGAAGG AGGAGCTTCTATCGAAGTTATCTAGGCAAGCTGACGATTTAACTCATCAAGAAAATCAAAGAAAAGGCACCATGTATAGCTCTTTATCATCGGTATCGGC GAGCCGGCTCAGTGACAGGGAAGTTGTCATTCATATCTCAACTAACAAGCTCCATAGAAGTTCATTATCAGAAATCTTGGTTAATTTAGAGGAGGCTGGA CTTCTTCTACTAAATTCTTCTTCCTTCGAGTCCTTTGGAGGCAGAGTCTTCTATAATTTACACCTTCAGGCCATGGAAGGAACTTACACAGTAGAGTGCG AGGCCTTGAATGAGAGGCTTGTGTCCTTGTGCGAGAAGAGGGAGTCATTGTTTCCATTAAATTCAAGTTCTCCATATTCCAACTGTGTATTCTAG
AA sequence Show only first row Show all	>Potri.016G037300.1 pacid=42810084 polypeptide=Potri.016G037300.1.p locus=Potri.016G037300 ID=Potri.016G037300.1.v4.1 annot-version=v4.1 MLEELSPISLFSTFGWPLEEAISHEQLYSFRDGETPESFTHFPPSQPDVRQLDRSTSFTAHSGSGDPSMAKKLNHNASERDRRKKINSLYSSLRSLLPAA DQRKKLSIPYTVSRVLVYIPKLQQQVERLIQRKEELLSKLSRQADDLTHQENQRKGTMYSSLSSVSASRLSDREVVIHISTNKLHRSSLSEILVNLEEAG LLLLNSSSFESFGGRVFYNLHLQAMEGTYTVECEALNERLVSLCEKRESLFPLNSSSPYSNCVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.016G037300 [exp]	0	1	Pt-ORG2.3
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.002G081800 [exp]	1.00	0.7991	Pt-ALDH3.1
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.002G070000 [exp]	4.00	0.7430
AT5G49690			UDP-Glycosyltransferase superf...		Potri.017G042800 [exp]	7.74	0.7964
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004032 [exp]	12.00	0.7641
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165800 [exp]	19.44	0.7119
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134100 [exp]	31.63	0.7444
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.015G133700 [exp]	36.46	0.7636
AT1G06900			Insulinase (Peptidase family M...		Potri.013G154600 [exp]	39.05	0.6837
AT1G23390			Kelch repeat-containing F-box ...		Potri.010G042900 [exp]	42.24	0.6989
AT3G09440			Heat shock protein 70 (Hsp 70)...		Potri.008G054766 [exp]	76.68	0.6682

Compare expression of checked genes

Potri.016G037300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.