Plant FIBer expression Database

Potri.016G037400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56990 822 / 0 EDA7 embryo sac development arrest 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019107
[exp]
714 / 0 AT3G56990 638 / 0.0 embryo sac development arrest 7 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08159 NUC153 NUC153 domain
Representative CDS sequence
>Potri.016G037400.1 pacid=42809435 polypeptide=Potri.016G037400.1.p locus=Potri.016G037400 ID=Potri.016G037400.1.v4.1 annot-version=v4.1
ATGGCAACGAAAGGTAGCGGATTGAAATCAACGTCGATAAATGGAGTGAAGATATACATGGTTTCTTCACAGCAACGTAATCCTGCTTCTTGGGTTGGCT
CCAAAAAGCAACGTCCTTCTCGCAAAGATAAAAATTATCAGCAAAAGATAGAGTTGGTTCAGGATTTAACATTTCCAACCGCTACGAGTAGAATTAAGGT
GACCCCAGATGGAGAATTTCTTATTGCATCAGGAATACACCCACCACAAATCAAAGTGTACGAGTTAAGAGAGTTCGCATTGAAGTTTGAAAGACACTTT
GATTCTGAGATAATTGATTTTCAGATATTGGATGATGACTATTCGAAGCTTGCATTTTTATGTGCTGATCGTTCTGTTTGCCTGCATGCGAAATATGGGA
AACACTACACTTTGCGAATTCCAAGAATGGGAAGGGATATGGCGTATGATTGTTGGTCTTGTGACTTGCTCTGTGCTGCCTCATCTTCAGATTTATATCG
GATTAATTTAGAAAAGGGGCAATTTCTCTCCCCCCTCAGAACACAATCACCAGGTCTAAATGTAGTTTGTCGGAGCAAGCTTCATGGACTTGTTGCTTGT
GGTGGTGATGATGGTGCTGTCGAATGTTTTGACATGAGAACAAAATCTTCAATTGGTAGAATTAATGCTGTTGAACATGGTGGTGATATTAGCGAGGAGG
TCACTGCATTAAAGTTTGATGAAGATGGGGGTTTCACCATGGCTGTTGGAAGCAGTGGTGGAAAGGTGCTGCTCTATGACTTGAGATCCTCACATCCCAT
GCGAGTCAAGGACCATATGTATGGCAGTGCAATATTGGACATCAAGTGGCATCGTACTCTTAATTCTGAAAGACAGAAGCTTATTACCACAGATAAACAT
GTTGTTAGAATATGGGACCCTGAGACGGGAGATGGCATGACAAGCATTGAACCTACTGCTGGAACAATAAATGATATATGTGTTTTCAGTAAAAGCGGCT
TAATGTTCCTGGCACTGGACTGCAGCCAGATACCATCTTACTTTATACCTTCTCTGGGACCTGCTCCAAAGTGGTTGCCTAGTATCGAAAATCTAACGGA
AGAGATGGAGGAGGATGCGCAAACAACCATTTATGATAATTTCAAATTTTTGACAAAAGAAGATCTTGAGAAATTGAACTTGACAAGTCTGATTGGCACC
AATCTTCTAAGAGCCTCTATGCATGGTTTCTTTATTGATTATAAATTATATAAGAAGGCAAAACAATACACGGAACCGTTTGAATATGAAACTTACAGAG
AGCAGCAGACGCAGAAGAAATTGGAAGAACAATTTGTGTCTCGGATTACGATTCCAAAAAAATTGCCGAAGGTTAACCGTAAACTTGCAGCCAGTGTCAT
TGAAAAAGAAGCTGAAATTGAACAGATCGAGGCTGATAAAAACGAGACCAAGAAAGCATCAAGGAAAAAGAAAGGACTTGGCCCTGAGATTTTTGAAGAT
GAGAGATTTAAAGCACTTTTTGAAGATAAGGACTTTGAGATTGATGAGAATTCAACAGAGTATTTGGCTTTACATCCCATGGCTTCCATGAAGCAACCTT
CTTTGGTGGCGGAGCATTTTGAACTTCTGACGGAGGATGAAGATCAGAGCTTGAGTGATTCTGATAACTCGGCTGCATCTCAGTCATCTGGAGATGAACA
CAGCAATGGAAATAGAAAATTAAAAAAGAAACCAAGATTATATGAAGTAAAGGATGAGAGGCATGCCGAGGCATTCTGGAACCGTGAATCTCTTGCAGAT
GAGGACTCTCTTCCTCTGGGAGAGAGAGCTGCAGCTCTTGGAGATAATCTGCTGACCTCTGCCCGAAATAACATAAAGTTTGGACCAGGAGGATCTCGTG
AAATTTCCTTCACTACACGAAGCTCAGCCACGTACAAAGAGGATGGGGAGGACAAAGACATGCAGCGTGAGAAGAGGAGGGGAATCCAGTCATTAGGGCT
GAAGTCAGCCAGATCAGGGTTTAGAGGTAATAGAAGAGGAGGAAGTAGGGGGAGGGGTAGAAGAGGCCGGCACTGA
AA sequence
>Potri.016G037400.1 pacid=42809435 polypeptide=Potri.016G037400.1.p locus=Potri.016G037400 ID=Potri.016G037400.1.v4.1 annot-version=v4.1
MATKGSGLKSTSINGVKIYMVSSQQRNPASWVGSKKQRPSRKDKNYQQKIELVQDLTFPTATSRIKVTPDGEFLIASGIHPPQIKVYELREFALKFERHF
DSEIIDFQILDDDYSKLAFLCADRSVCLHAKYGKHYTLRIPRMGRDMAYDCWSCDLLCAASSSDLYRINLEKGQFLSPLRTQSPGLNVVCRSKLHGLVAC
GGDDGAVECFDMRTKSSIGRINAVEHGGDISEEVTALKFDEDGGFTMAVGSSGGKVLLYDLRSSHPMRVKDHMYGSAILDIKWHRTLNSERQKLITTDKH
VVRIWDPETGDGMTSIEPTAGTINDICVFSKSGLMFLALDCSQIPSYFIPSLGPAPKWLPSIENLTEEMEEDAQTTIYDNFKFLTKEDLEKLNLTSLIGT
NLLRASMHGFFIDYKLYKKAKQYTEPFEYETYREQQTQKKLEEQFVSRITIPKKLPKVNRKLAASVIEKEAEIEQIEADKNETKKASRKKKGLGPEIFED
ERFKALFEDKDFEIDENSTEYLALHPMASMKQPSLVAEHFELLTEDEDQSLSDSDNSAASQSSGDEHSNGNRKLKKKPRLYEVKDERHAEAFWNRESLAD
EDSLPLGERAAALGDNLLTSARNNIKFGPGGSREISFTTRSSATYKEDGEDKDMQREKRRGIQSLGLKSARSGFRGNRRGGSRGRGRRGRH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56990 EDA7 embryo sac development arrest ... Potri.016G037400
[exp]
0 1
AT3G16840 P-loop containing nucleoside t... Potri.010G063600
[exp]
1.73 0.8392
AT1G69070 unknown protein Potri.010G140100
[exp]
4.24 0.8005
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) ... Potri.015G133400
[exp]
4.89 0.7651 PRH75.2
AT5G61330 rRNA processing protein-relate... Potri.019G085100
[exp]
4.89 0.7492
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.013G145300
[exp]
7.14 0.7773
AT1G72440 SWA2, EDA25 SLOW WALKER2, embryo sac devel... Potri.001G164100
[exp]
8.48 0.7773
AT3G18600 P-loop containing nucleoside t... Potri.001G250700
[exp]
10.39 0.7520
AT1G63980 D111/G-patch domain-containing... Potri.003G132600
[exp]
10.95 0.6948
AT1G50920 Nucleolar GTP-binding protein ... Potri.009G054000
[exp]
11.83 0.7438
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.002G203700
[exp]
14.49 0.7627

Potri.016G037400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.