Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57000 338 / 4e-117 nucleolar essential protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040600 [exp] 434 / 2e-155 AT3G57000 349 / 1e-121 nucleolar essential protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028959 [exp] 353 / 8e-123 AT3G57000 352 / 3e-122 nucleolar essential protein-related (.1) Lus10007483 [exp] 349 / 3e-121 AT3G57000 347 / 1e-120 nucleolar essential protein-related (.1) Lus10032054 [exp] 258 / 5e-86 AT3G57000 239 / 2e-78 nucleolar essential protein-related (.1) Lus10035222 [exp] 257 / 9e-86 AT3G57000 239 / 2e-78 nucleolar essential protein-related (.1) Lus10032053 [exp] 176 / 7e-54 AT3G57000 163 / 1e-48 nucleolar essential protein-related (.1) Lus10035220 [exp] 176 / 1e-53 AT3G57000 165 / 3e-49 nucleolar essential protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [poplar] [flax] SPOUT PF03587 [poplar] [flax] EMG1 EMG1/NEP1 methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.016G037500.3 pacid=42810128 polypeptide=Potri.016G037500.3.p locus=Potri.016G037500 ID=Potri.016G037500.3.v4.1 annot-version=v4.1 ATGGTGAGGCCTTATGGTAAAGGGCACAAGAGAAAGAAGAAAGGGGAGAGGTATGATAAAGAAGAAGATGAAGTGGAAGATAAACAAGTTGAAGAAGAGA ACACTGATGATGAGACTGAAATAAGCGCACAAGATGCTGAAGAAAAAACAGAAGAGGAAAGAGAAGAACTACCAGAATTGGAGGGCATTCCTGTTGGCCC AAGTACTCAAACTGCCAAAAAACCTGGGGTCATATTTGTGCTGGAAAAGGCATCTTTGGAAGTTGCAAAAGTTGGAAAGAATTACCAAATTTTGAATTCT GAGGAGCATGCCAATTTCCTGAGGAGGAATAATAAAAATCCTGCTGATTACAGGCCTGACATCATTTATCAGGCTCTCCTATCCATCTTAGATAGCCCAT TGAATAAGGCTGGGTGTTTGCGAGCTGTATATGTGAAAACAGATAAAGGTGTTCTTTTTGAAGTTAAGCCATATGTTCGTATTCCAAGGACTTATAAGCG TTTTGCTGGTATTATGTTGCAGCTGCTTCAAAAGCTTAGTATTGCTGCTGTTGGTAAGCGTGAGAAGCTTTTGCGCGTGATCAAGAATCCTGTAACCCAG CACCTACCTTTAAACTCTCGTAAAATAGGCTTCTCCCATAGCTCAGACAAATTTGTCGAAATGGAGAAGTATGTAGCCGGAGTTGGTGGTGACACTGACC TTGTTTTCGTGGTTGGTGCTATGTCCCATGGTAAAATTGAATGTGATTATATAGATGATTTTATATCAGTTTCAGAATATCCGCTGAGTGCTGCCTGGTG TATTGCAAGGATATGTGAGGCTGTGTCAAAGAAGTGGCGTGTACTGTAA
AA sequence Show only first row Show all	>Potri.016G037500.3 pacid=42810128 polypeptide=Potri.016G037500.3.p locus=Potri.016G037500 ID=Potri.016G037500.3.v4.1 annot-version=v4.1 MVRPYGKGHKRKKKGERYDKEEDEVEDKQVEEENTDDETEISAQDAEEKTEEEREELPELEGIPVGPSTQTAKKPGVIFVLEKASLEVAKVGKNYQILNS EEHANFLRRNNKNPADYRPDIIYQALLSILDSPLNKAGCLRAVYVKTDKGVLFEVKPYVRIPRTYKRFAGIMLQLLQKLSIAAVGKREKLLRVIKNPVTQ HLPLNSRKIGFSHSSDKFVEMEKYVAGVGGDTDLVFVVGAMSHGKIECDYIDDFISVSEYPLSAAWCIARICEAVSKKWRVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57000			nucleolar essential protein-re...		Potri.016G037500 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.008G059100 [exp]	20.92	0.8230
					Potri.010G238700 [exp]	31.52	0.7536
AT5G08520	MYB		Duplicated homeodomain-like su...		Potri.005G087700 [exp]	32.49	0.8010
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.019G133200 [exp]	33.22	0.7971
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.007G023500 [exp]	35.29	0.7454
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.007G005300 [exp]	38.97	0.8152
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	45.82	0.8065
AT5G40530			S-adenosyl-L-methionine-depend...		Potri.001G344000 [exp]	48.64	0.7446
AT5G62270			unknown protein		Potri.007G133900 [exp]	51.97	0.7687
AT1G13360			unknown protein		Potri.015G054300 [exp]	60.59	0.7760

Compare expression of checked genes

Potri.016G037500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.