Plant FIBer expression Database

Potri.016G037600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41250 372 / 1e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
AT1G14310 185 / 1e-57 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G040800
[exp]
506 / 0 AT2G41250 362 / 8e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Potri.010G093900
[exp]
186 / 5e-58 AT1G14310 319 / 9e-111 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039005
[exp]
424 / 3e-151 AT2G41250 384 / 4e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10027299
[exp]
412 / 2e-146 AT2G41250 383 / 8e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10010452
[exp]
404 / 2e-143 AT2G41250 367 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10037187
[exp]
179 / 2e-55 AT1G14310 335 / 3e-117 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10036740
[exp]
177 / 1e-54 AT1G14310 343 / 2e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10015451
[exp]
44 / 8e-05 AT5G44730 417 / 1e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF13419 HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence
>Potri.016G037600.1 pacid=42810395 polypeptide=Potri.016G037600.1.p locus=Potri.016G037600 ID=Potri.016G037600.1.v4.1 annot-version=v4.1
ATGGAAGCAGCAAGAACAAAATTAACAAGGGTTCTTTCAAGAACCTTCATTAATAATGTTAAAGACAAGGCTCAGAGGGTAATGGGATCTGGGTCTTCTT
TTAAGGGGCTGGCTAAGTATTCAACATCTGCAGCTGCAGTAGTGAAGGATTATGAGGATTATAGGAAGTCTTTGTATGGTGATATTACACATAAAGCTTT
GCTTGTTGATGCTGTTGGTACTCTTGTGGTTCCCTCACAGCCTATGGCTCAGATATATAGACAGATGGGGGAGAAGTACGGAGTGGAGTACTCCGAGGAT
GAGATACTAAGAAGATACAGATGGGCTTATGGGCAGCCTTGGGGCAGATCTCGTCTCAGATATGTAAATGATGGGAGGCCCTTCTGGCAGTATATAGTCA
GTTCTTCCACCGGCTGCTCAGATACTCAGTACTTTGAAGAGCTTTATAACTACTATACCACTGAAAAGGCTTGGCACCTCTGTGATCCTGATGCTGAGAA
AGTGTTTGAGGCCATTAAAAAGGCAGGTGTAAAATTGGCTGTTGTGTCAAACTTTGACACCCGACTTAGACCTCTCCTGCGGGCTTTAAACTGTGATCAC
TGGTTTGATGCTGTGGCAGTTTCAGCTGAAGTTGCAGCGGAGAAGCCAAATCCAACAATATTTCTAAAAGCTTGTGAGTTGTTGGAAGTAAAACCAGAAG
ATGCTGTGCATGTAGGGGATGATCGTAGGAATGATATATGGGGTGCGAGAGATGCAGGATGCGATGCTTGGCTTTGGGGAAGTGATGTCCACTCCTTCAA
GGAGGTCGCACAGAGGATAGGCGTGCACGTTTGA
AA sequence
>Potri.016G037600.1 pacid=42810395 polypeptide=Potri.016G037600.1.p locus=Potri.016G037600 ID=Potri.016G037600.1.v4.1 annot-version=v4.1
MEAARTKLTRVLSRTFINNVKDKAQRVMGSGSSFKGLAKYSTSAAAVVKDYEDYRKSLYGDITHKALLVDAVGTLVVPSQPMAQIYRQMGEKYGVEYSED
EILRRYRWAYGQPWGRSRLRYVNDGRPFWQYIVSSSTGCSDTQYFEELYNYYTTEKAWHLCDPDAEKVFEAIKKAGVKLAVVSNFDTRLRPLLRALNCDH
WFDAVAVSAEVAAEKPNPTIFLKACELLEVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVAQRIGVHV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41250 Haloacid dehalogenase-like hyd... Potri.016G037600
[exp]
0 1
AT3G06483 ATPDHK, PDK pyruvate dehydrogenase kinase ... Potri.010G002000
[exp]
1.00 0.8775 Pt-PDK.1
AT3G10572 APEM9 ABERRANT PEROXISOME MORPHOLOGY... Potri.006G078700
[exp]
2.44 0.8149
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.002G120600
[exp]
5.65 0.8159
AT1G67050 unknown protein Potri.017G115700
[exp]
8.60 0.8187
AT1G26320 Zinc-binding dehydrogenase fam... Potri.017G002300
[exp]
9.00 0.8163
AT4G15248 CO B-box type zinc finger family ... Potri.017G039400
[exp]
19.44 0.7326
AT3G61180 RING/U-box superfamily protein... Potri.002G155200
[exp]
21.16 0.8058
AT3G51030 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOX... Potri.005G232700
[exp]
26.24 0.7789
AT5G09680 RLF reduced lateral root formation... Potri.001G263800
[exp]
26.45 0.7373
AT2G32950 FUS1, EMB168, D... FUSCA 1, EMBRYO DEFECTIVE 168,... Potri.014G159300
[exp]
29.93 0.7714 COP1.1

Potri.016G037600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.