Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41290 403 / 2e-139 SSL2 strictosidine synthase-like 2 (.1) AT3G57030 349 / 3e-118 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G22020 317 / 2e-105 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 314 / 2e-104 SSL3 strictosidine synthase-like 3 (.1) AT3G57010 278 / 1e-90 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 278 / 1e-90 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41300 270 / 6e-87 SSL1 strictosidine synthase-like 1 (.1) AT3G59530 263 / 2e-84 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT1G74000 196 / 2e-59 SS3 strictosidine synthase 3 (.1) AT1G74020 188 / 2e-56 SS2 strictosidine synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040900 [exp] 653 / 0 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 355 / 1e-120 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.001G214500 [exp] 323 / 8e-108 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.008G109966 [exp] 310 / 3e-103 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 310 / 3e-103 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.007G130700 [exp] 283 / 3e-92 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 276 / 3e-89 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.015G037700 [exp] 185 / 4e-55 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1) Potri.012G046200 [exp] 175 / 2e-51 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012095 [exp] 325 / 3e-109 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10008451 [exp] 314 / 2e-104 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10013370 [exp] 268 / 1e-86 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10008151 [exp] 268 / 9e-86 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 265 / 1e-84 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10006331 [exp] 223 / 8e-70 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10034411 [exp] 215 / 3e-67 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10029599 [exp] 200 / 4e-61 AT3G57030 204 / 3e-63 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006330 [exp] 201 / 6e-61 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009646 [exp] 201 / 1e-59 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF08450 [poplar] [flax] SGL SMP-30/Gluconolactonase/LRE-like region
Representative CDS sequence Show only first row Show all	>Potri.016G037700.3 pacid=42809719 polypeptide=Potri.016G037700.3.p locus=Potri.016G037700 ID=Potri.016G037700.3.v4.1 annot-version=v4.1 ATGCACATAAACTCTTCTTTCTTGAACCACCAAGAACACTTTTCTTTTTTCATAACTATGGCCACGAAATTCTTGTTCATGGCCATACCTCTTCTTCTCT CCACCTTAGTCATTGTTATGTTGTCCTCTGAAACATCCAATTTGGAACCTCTCTCCGACGCCAAAGTTAGTCAACTTAATGAGATTCCGATTGTGGGTGC CATCGGGCCTGAAAGTTTTGCATTTGATTCGCTTGGAGAGGGTCCCTATACCAGTTTGTCGGATGGCAGGATAATCAAATGGCAAGGAGATAAAAAAAGA TGGATAGATTTTGCTGTAACTTCTCCAAACAGGGACGGCTGTGGAGGGCCACATGATCACCATCAGATGGAGCATGTTTGCGGGCGTCCATTAGGTTCAT GCTTCGACGAAACACACGGTGATCTATATATTGCCGATGCTTACATGGGATTATTTAGAGTGGGGCCTGAAGGTGGCTTGGCCACTAAGATCGCGACACA TGCACAAGGAATTCCCTTCAGATTCACTAACAGTTTGGACATAGACCAATCAAGTGGTGCCATTTATTTTACTGATAGTAGCACACAATACCAAAGAAGT TTGGACATATACCAATCAAGTGGTGCCATTTATTTTACTGATAGTAGCACACAATACCAAAGAAGGGATTATCTCTCTGTGGTATTGAGCGGGGATAAAT CAGGAAGACTGATGAAATATGATACAGCAAGCAAACAAGTGACAGTACTTCTCAAGAACCTCACGTTTCCAAACGGAGTAGCATTAAGCAAGGATGGCAG TTTCGTTCTATTAGCAGAGACCACCAGCTGTAGAATCTTAAGGTATTGGATAAAAACATCAAAAGCTGGAGCTCTTGAAGTCTTTGCTCAGCTACAAGGT TTCCCAGATAACATAAAAAGGAGCCCTAGAGGAGGATACTGGGTTGGTATAAATTCGAAAAGAGAGAAGCTTTCTGAGTTGCTATTTTCATATCCATGGA TCGGGAAAGTCTTGCTTAAACTTCCATTGGACATAACGAAATTTCAAACAGCTTTGGCCAAGTACAGGGGCGGCGGCTTGGCAGTGAGGTTGAGTGAGAA TGGTGACATAGTGGAAGTGTTTGAAGACAGAGATGGAAATAGACTGAAATCAATAAGTGAAGTGATGGAGAAAGATGGGAAATTATGGATAGGGTCGATA GATTTACCCTTTGCTGGCAGGTTTAAGTTATGA
AA sequence Show only first row Show all	>Potri.016G037700.3 pacid=42809719 polypeptide=Potri.016G037700.3.p locus=Potri.016G037700 ID=Potri.016G037700.3.v4.1 annot-version=v4.1 MHINSSFLNHQEHFSFFITMATKFLFMAIPLLLSTLVIVMLSSETSNLEPLSDAKVSQLNEIPIVGAIGPESFAFDSLGEGPYTSLSDGRIIKWQGDKKR WIDFAVTSPNRDGCGGPHDHHQMEHVCGRPLGSCFDETHGDLYIADAYMGLFRVGPEGGLATKIATHAQGIPFRFTNSLDIDQSSGAIYFTDSSTQYQRS LDIYQSSGAIYFTDSSTQYQRRDYLSVVLSGDKSGRLMKYDTASKQVTVLLKNLTFPNGVALSKDGSFVLLAETTSCRILRYWIKTSKAGALEVFAQLQG FPDNIKRSPRGGYWVGINSKREKLSELLFSYPWIGKVLLKLPLDITKFQTALAKYRGGGLAVRLSENGDIVEVFEDRDGNRLKSISEVMEKDGKLWIGSI DLPFAGRFKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037700 [exp]	0	1
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037800 [exp]	1.00	0.9168
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120501 [exp]	4.24	0.8390
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G143800 [exp]	4.69	0.8262
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G145700 [exp]	4.89	0.8720	Pt-ARA1.1
AT3G52480			unknown protein		Potri.016G071700 [exp]	4.89	0.8261
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	5.29	0.8365
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Potri.014G012600 [exp]	5.29	0.8152	ACS1.2,ACS4
AT1G14190			Glucose-methanol-choline (GMC)...		Potri.010G168200 [exp]	5.47	0.8423
AT2G30100			pentatricopeptide (PPR) repeat...		Potri.009G075200 [exp]	8.12	0.7935
AT1G07850			Protein of unknown function (D...		Potri.009G026300 [exp]	10.77	0.7832

Compare expression of checked genes

Potri.016G037700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.