Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CBL.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57050 714 / 0 CBL cystathionine beta-lyase (.1.2.3) AT3G01120 216 / 1e-63 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 197 / 4e-58 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G64660 141 / 3e-37 ATMGL methionine gamma-lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086500 [exp] 223 / 2e-66 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G084000 [exp] 127 / 5e-32 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G146600 [exp] 61 / 3e-10 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.003G187032 [exp] 57 / 4e-09 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039016 [exp] 743 / 0 AT3G57050 688 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10027313 [exp] 736 / 0 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10030694 [exp] 219 / 6e-65 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 209 / 2e-61 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000880 [exp] 140 / 7e-37 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 124 / 1e-30 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 118 / 4e-29 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 109 / 7e-26 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 101 / 1e-23 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10001671 [exp] 64 / 1e-11 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF01053 [poplar] [flax] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.016G038200.1 pacid=42809464 polypeptide=Potri.016G038200.1.p locus=Potri.016G038200 ID=Potri.016G038200.1.v4.1 annot-version=v4.1 ATGACATCTTCGCTCTCTCTCAAACCCTATTTCAGCTCTCTCTATACTGAAGTCAGTAACAACCGGGGTTTGGGAAGTGGGTTTTTGCCTACAAGTTTTT GGGTTAAAAAGGACTGCAGTTTAAGGGGGAAGAATTTGATTATAGTAAAGAAATTTGAAGTGAATTGCTTGAAAGATAAAGATATGGATGTGAGAACTTC AGCTTTGGTTGATGGTGTAGCAGAGTGTTTAAATGAAATTGAGATTAAGGAACCTAGTGTTTCGACAATATTGATGAATTTTGAGAACAAGTTCGATCCT TATGGTGCAATGAGTACACCACTTTACCAAACAGCTACATTTAAGCAGTCATCAGCGACAGAGAATGGTCAATATGATTATACTAGAAGTGGAAATCCTA CAAGGGATGCCTTAGAAAGCCTCCTGGCGAAGCTAGATAAAGGAGATCGGGCATTATGCTTCACAAGTGGAATGGCTGCTTTGGCTGCTGTCACTCATCT TGTTGGAACAGGCCAGGAAATTGTTGCTGGAGATGACATTTATGGTGGTTCTGACCGATTGTTGTCACAAGTAACTCCGAAGGCCGGAATTGTGGTTAAA CGGGTAAATACAAGTGATCTACATGAAGTTGCATCTGCAATTGGTCCCCAAACAAAGCTCGTGTGGCTAGAGAGCCCAACTAACCCTCGTCAACAAATTT CTGATATTCGTAAAATTGCAGAGATGGCTCATGCACATGGTGCTCTTGTCTTGGTAGATAATAGTATTTTGTCTCCTGTATTATCACAACCGCTGGAACT TGGAGCAGACATTGTGATGCACTCAGTGACTAAATTTATAGCTGGACATAGTGATGTCATGGCAGGTGTGCTTGTGGTAAAAGGGGAAAGCTTGGCAAGA GATCTGTATTTCCTCCAAAATGCAGAAGGCTCTGGGTTAGCACCATTTGACTGTTGGATTTGCTTACGAGGCATCAAAACCATGGCCTTACGAGTTGAGA AACAGCAGGAGAATGCACAGAAAATTGCCGAGTTCCTTGCAGCACATCCACGGGTGAAGAAAGTAAATTATGCAGGTCTTCCTGGTCATCCTGGACGTGA TTTGCACTATTCTCAGGCAAAGGGTGCAGGATCAGTGCTTAGCTTTCTCACAGGATCACTGGCTCTCTCGAAGCATGTTGTTGAGACTACCAAGTATTTC AGCATAACTGTCAGTTTTGGGAGTGTAAAATCCCTTATAAGCATGCCCTGCTTCATGTCCCATGCAAGTATACCAGCTGCAGTACGAGAAGCCAGAGGTC TCACTGAAGATCTTATTCGTATCTCAGTGGGGATAGAGGATGTCAATGATCTGATTGCTGATTTAGACCATGCAATAAGAACTGGACCATTATAG
AA sequence Show only first row Show all	>Potri.016G038200.1 pacid=42809464 polypeptide=Potri.016G038200.1.p locus=Potri.016G038200 ID=Potri.016G038200.1.v4.1 annot-version=v4.1 MTSSLSLKPYFSSLYTEVSNNRGLGSGFLPTSFWVKKDCSLRGKNLIIVKKFEVNCLKDKDMDVRTSALVDGVAECLNEIEIKEPSVSTILMNFENKFDP YGAMSTPLYQTATFKQSSATENGQYDYTRSGNPTRDALESLLAKLDKGDRALCFTSGMAALAAVTHLVGTGQEIVAGDDIYGGSDRLLSQVTPKAGIVVK RVNTSDLHEVASAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAHGALVLVDNSILSPVLSQPLELGADIVMHSVTKFIAGHSDVMAGVLVVKGESLAR DLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQENAQKIAEFLAAHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF SITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRISVGIEDVNDLIADLDHAIRTGPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Potri.016G038200 [exp]	0	1	CBL.1
AT5G67220			FMN-linked oxidoreductases sup...		Potri.007G047300 [exp]	1.73	0.8128
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.010G114400 [exp]	4.69	0.7804	/IMPCH1
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.008G078800 [exp]	5.47	0.7768
AT1G66890			unknown protein		Potri.004G097200 [exp]	7.07	0.7448
AT5G65620			Zincin-like metalloproteases f...		Potri.007G004600 [exp]	7.34	0.7584
AT5G07900			Mitochondrial transcription te...		Potri.004G222000 [exp]	10.24	0.7952
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	13.85	0.8036
AT5G48620			Disease resistance protein (CC...		Potri.014G005300 [exp]	15.55	0.7673
AT5G65780		ATBCAT-5	branched-chain amino acid amin...		Potri.007G008000 [exp]	15.74	0.7347
AT2G43110			unknown protein		Potri.014G150100 [exp]	16.43	0.7573

Compare expression of checked genes

Potri.016G038200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.