Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35030 700 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 503 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 470 / 7e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 464 / 2e-155 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G13600 400 / 8e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62260 385 / 1e-125 MEF9 mitochondrial editing factor 9 (.1) AT4G16835 372 / 2e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 355 / 1e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G36980 355 / 2e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 350 / 5e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 529 / 4e-180 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 483 / 6e-163 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 476 / 5e-160 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G019900 [exp] 454 / 5e-151 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G139200 [exp] 410 / 4e-135 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.003G081700 [exp] 400 / 7e-131 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 381 / 1e-124 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G354400 [exp] 377 / 4e-122 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 373 / 3e-119 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013540 [exp] 491 / 4e-165 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 482 / 2e-162 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012514 [exp] 417 / 4e-139 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10030549 [exp] 400 / 4e-130 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 397 / 6e-130 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003857 [exp] 385 / 1e-125 AT4G02750 404 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 384 / 4e-124 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 382 / 1e-123 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 380 / 8e-122 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 348 / 3e-111 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G038400.2 pacid=42809415 polypeptide=Potri.016G038400.2.p locus=Potri.016G038400 ID=Potri.016G038400.2.v4.1 annot-version=v4.1 ATGCAATTAGTGTTTAAAATATCAAACACTTTGTCCTCTTCAAGAAAAACTAATAAACTACCCTTAATTCTATGTAACCTCTATCATTCAAGCAAAATTT CAGTACCTAATAGAGATTGCATTCGCAATTCTGACATAGCACGTTCCAATTGGCTAATCACTAGGCTAAGTAGAGAAGGGAATATCAATGACGCACGTCA AGTGTTTGACAAAATGCATGAACGAGATGTGGTGACATGGACAGCAGTGATTTCTGGGTATATAAAATGTGGATTGATTGTGGATGCAAGGAGGTTGTTT GATAGAGTTGATGCAATTAAAGATGTGGTCACTTGGACTGCGATGTTAAGCGGGTATGTGAGGTTGAAGAGGATTGAGGAAGCTGAGAGGTTGTTTGAGG TGATGCCAGTGAAGAATGTTGTTTCTTGGAATACAATGATTGATGGGTATGGAAAAAATAGGGAGGTAGATAAGGCTATTGAGGTGTTTGAGAGGATGCA TGAGAGAAATATGGTTTCTTGGAATGCAGTGATTGCTGCGTTGGTTCAATGTGGAAGGGTAGAGGAGGCTAGGAGGAGGTTTGATGAAATGCCTAAAAGA GATGTGATTTCGTGGACTACGATGGTTATGGGGTTGGCGAGGTCTGGGAGAGTTGACGAGGCTAGAAAGGTTTTTGATAGGATGCCAGAGAGGAATGTTG TGTCATGGAATGCGATGGTTACTGGTTATGCCAAGAATATGAGGCTGGATGAGGCTTTTGATTTGTTTGAGAGGATGCCTGAAAGGAATTTATCCTCGTG GAATACAATGATCACAGGGTTTATTCAGAATGGAGAGCTAGCATGGGCAAGGAAGGTGTTCAATGAGATGCCTGAAAAGAATGTTGTTTCCTGGACTACC ATGATAACTGGGTATGTTCAAGAGGGAGAAAGTGAATCAGCATTGAAGGTCTTTGTGGAAATGATAAAGGATGGTGGAGCCAGGCCTAATGAGGGGACCT TTGTTAATGTTTTGGGAGCTTGCAGTGACATGGCTGGTCTTGGTGAAGGGCAGCAAGTTCATTTGTTGATCAGTAAAAGTGTTTATCAGGATAGGACATT TGTCGCATCTGCACTCTTGAATATGTACTCGAAATGCGGAGAGTTGAGTATTGCAAGGAAAATATTTGATGACGTAGTGATAAGCCAGAGGGATTTGGTT TTGTGGAATGGTATGATTGCAGCCTATGCACATCATGGATGTGGGATGGAGGCAATTGAATTGTTCGAGGACATGCAGGGTTTAGGGTTTAAGCCTAATG ATGTTAGCTATGTGGAATTGCTCAGTGCTTGCAGCCATGCTGGTTTGGTGGATGAGGGACTAAACTACTTCGACGAGCTTGGGAGAGACAATTCCATACA ATTAAGAGAGGATCATCATGCATGTTTGGTGGATTTATGTGGCCGAGCAGGGAGGCTCAAGGAGGCTTATGATTTTATTAAGCAGCTAGGGACCAAGGCA TCATCCTCTATTTGGGGCGGTCTACTTGCTGGATGTAATGCCCATGGGGATCTGGAAATAGGGCAGCTGGCTGCAAAAGAGCTCGAAAAGGAGGATCCCG AGAATGCAGGAACCTATTTGTTGTTGTCTAACATATATGCTTCTGGTAGGAAATGGAGAGAAGCCTCGAGAGTGAGGTTGAAAATGAAAGAAAAGGGATT GAAGAAGCAACCTGGTTGCAGTTGGATTGAAGTTGGAAACAGGGTTCATGTGTTTTTAGCTCGTGACAAGTCTCATTATCAATCTAATCTTATTTATTCT TTAGTCCATGATATTCATGCAGAAATGAAGGCAGAGCATGTACCGAATAATGATTTTGTAGATGAGAGGAAGATTTTTCATCAACTCAGATAA
AA sequence Show only first row Show all	>Potri.016G038400.2 pacid=42809415 polypeptide=Potri.016G038400.2.p locus=Potri.016G038400 ID=Potri.016G038400.2.v4.1 annot-version=v4.1 MQLVFKISNTLSSSRKTNKLPLILCNLYHSSKISVPNRDCIRNSDIARSNWLITRLSREGNINDARQVFDKMHERDVVTWTAVISGYIKCGLIVDARRLF DRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKR DVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTT MITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLV LWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKA SSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWIEVGNRVHVFLARDKSHYQSNLIYS LVHDIHAEMKAEHVPNNDFVDERKIFHQLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35030			Pentatricopeptide repeat (PPR)...		Potri.016G038400 [exp]	0	1
AT5G63630			P-loop containing nucleoside t...		Potri.002G169800 [exp]	4.35	0.7986
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.002G066100 [exp]	12.48	0.7454
AT3G15080			Polynucleotidyl transferase, r...		Potri.001G373500 [exp]	14.49	0.7095
AT1G04780			Ankyrin repeat family protein ...		Potri.003G177000 [exp]	20.49	0.7082
AT2G46200			unknown protein		Potri.014G091400 [exp]	22.93	0.7615
AT4G23860			PHD finger protein-related (.1...		Potri.003G140000 [exp]	23.36	0.7290
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.003G002500 [exp]	33.01	0.7150
AT4G37130			hydroxyproline-rich glycoprote...		Potri.007G036600 [exp]	34.20	0.7113
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Potri.006G132600 [exp]	35.36	0.7208	Pt-RHL2.1
AT3G06270			Protein phosphatase 2C family ...		Potri.010G028300 [exp]	35.44	0.7221

Compare expression of checked genes

Potri.016G038400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.