Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57080 287 / 1e-98 RPB5B, NRPE5 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT2G41340 276 / 2e-94 RPB5D "RNA polymerase II fifth largest subunit, D", RNA polymerase II fifth largest subunit, D (.1) AT3G54490 209 / 5e-68 RPB5E "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) AT3G22320 134 / 7e-39 RPB5A, NRPD5, NRPB5, ATRPABC24.3 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT5G57980 111 / 4e-30 RPB5C "RNA polymerase II fifth largest subunit, C", RNA polymerase II fifth largest subunit, C (.1) AT3G16680 42 / 3e-05 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025500 [exp] 252 / 7e-85 AT3G54490 249 / 1e-83 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.006G161600 [exp] 144 / 6e-43 AT3G22320 365 / 2e-130 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.T127006 [exp] 91 / 3e-23 AT3G54490 92 / 5e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.003G200450 [exp] 89 / 1e-22 AT3G54490 92 / 4e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.001G179300 [exp] 71 / 1e-15 AT3G54490 92 / 6e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018022 [exp] 330 / 2e-115 AT3G57080 280 / 6e-96 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10042019 [exp] 294 / 2e-101 AT3G57080 239 / 4e-80 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10024169 [exp] 206 / 2e-66 AT3G54490 221 / 7e-73 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10039554 [exp] 183 / 3e-57 AT3G54490 184 / 6e-58 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10013639 [exp] 142 / 7e-42 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10001335 [exp] 142 / 7e-42 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01191 [poplar] [flax] RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain CL0236 [poplar] [flax] PDDEXK PF03871 [poplar] [flax] RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G038500.1 pacid=42809265 polypeptide=Potri.016G038500.1.p locus=Potri.016G038500 ID=Potri.016G038500.1.v4.1 annot-version=v4.1 ATGGAGCAAAATTTACTAACGGAGAGACCGAATGAAGAAGAAGGAGGAGCTCATCAAGAAAAAGAAAATGGGAGTTTTGGAATGGAGTCTCTGGGGAGGT GCTTGAGCAGCTTTGTTGATGAAGGTAGCACAGAGAGCCACAGATACTATCTTTCCAGAAGAACTGTGCTTGAGATGTTAAAAGATAGAGGCTATTCTGT TCCAAGTTCAGAGATTGACATTTCTTTGCAAGATTTTAGAGGCGTTTATGGTCAAAACCCTGATATTGAACTCCTCAAGTTTTCTGCCACCCATAAATCA GATCCTTCAAAAAGGATGCTGGTGATTTTCTGTGGCCTTGGTGTGGTTAAAGTTGGCATGATTCGTCTCATTACGGTTCAGATTACTGACAGAGACAGTT TGACTGGTCTGATATTAGTCTTGCAAAACAACATAACTAATCAAGCTATGAAAGCTCTGGATCTTTTCAAATTCAAGATTGAAATATTCCAGATAACTGA CTTGCTTGTTAATATCACAAAGCATATATTAAAGCCAAAGCATCAGGTGCTAAGTGAGCAGGCAAAACAAAGGCTCTTGAAGAAGTACAGTATAGAAGAA AAGCAGCTTCCTCGACTGTTAAAGAAAGATGCAATTTCACGATACTATGGCCTCGAGAGGGGACAGGTGGTGAAGGTCACCTATGATGGTGATATTACGG GGTCACATGTAACTTATCGCTGTGTCTGGTGA
AA sequence Show only first row Show all	>Potri.016G038500.1 pacid=42809265 polypeptide=Potri.016G038500.1.p locus=Potri.016G038500 ID=Potri.016G038500.1.v4.1 annot-version=v4.1 MEQNLLTERPNEEEGGAHQEKENGSFGMESLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKS DPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEE KQLPRLLKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Potri.016G038500 [exp]	0	1
AT4G39630			unknown protein		Potri.007G085100 [exp]	2.00	0.8695
					Potri.002G048101 [exp]	3.00	0.8712
AT3G25805			unknown protein		Potri.010G127200 [exp]	3.00	0.8820
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Potri.012G072700 [exp]	3.74	0.8315
AT5G12900			unknown protein		Potri.001G016600 [exp]	4.69	0.8339
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	6.00	0.8775
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	11.83	0.8642
AT3G13550		EMB144, COP10, ...	FUSCA 9, EMBRYO DEFECTIVE 144,...		Potri.001G089300 [exp]	12.24	0.8304
AT1G49510		EMB1273	embryo defective 1273 (.1)		Potri.005G149500 [exp]	13.19	0.8593
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.007G067500 [exp]	14.49	0.8350	Pt-UBQ7.1

Compare expression of checked genes

Potri.016G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.