Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16390 444 / 1e-151 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G79360 437 / 1e-148 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16370 325 / 4e-105 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G79410 323 / 1e-104 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G73220 273 / 5e-85 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT3G20660 204 / 5e-59 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174400 [exp] 446 / 2e-152 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 379 / 5e-126 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.015G029400 [exp] 266 / 4e-82 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.012G037400 [exp] 264 / 2e-81 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.011G130533 [exp] 178 / 3e-49 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.018G150700 [exp] 50 / 4e-06 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000286 [exp] 216 / 7e-66 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10014801 [exp] 181 / 2e-50 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10013330 [exp] 177 / 4e-49 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10005217 [exp] 65 / 7e-11 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10026758 [exp] 57 / 8e-09 AT3G20660 199 / 7e-60 organic cation/carnitine transporter4 (.1) Lus10005825 [exp] 52 / 1e-08 AT1G16390 65 / 4e-14 organic cation/carnitine transporter 3 (.1) Lus10018992 [exp] 43 / 0.0007 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.016G039000.2 pacid=42809814 polypeptide=Potri.016G039000.2.p locus=Potri.016G039000 ID=Potri.016G039000.2.v4.1 annot-version=v4.1 ATGGCAGATTCCAGCCCTCTGTTGCCTCCATTCCTTCTGGCGGAGCCAGAAAATTCGGCTGTCGATGAACCTCAGGCGTCTCTTGATTCGGTTGTTGAAA GGGTAATAGGAGATTTTGGATGGACCCAATTAGTTCAATCCACTCTTGTATTGTTATCAAGGTTCTTTGATGCTCAGCAGACATTCATTAGTGTCTACGC AGACTCGGAACCGGCGTGGCACTGCATCAACAATGGCATGTGCAACTCAAGTGCTAACATATGTGACCTTTCCAAGTCTTCATGGGCCTGGAATGGACAC ACTTACAAGACAATCATATCGGATTGGGATCTTGAATGTGCAAGCTCCTTCATAAAAGGCCTGCCAGCGTCGTCTTTCTTTCTCGGTTGCTTGCTTGGTG GTTTCGTTCTAGGCACACTTGCTGACACTTCTCTTGGCAGAAAGAACTTGCTAACACTTTCTTGTCTAATAATGTCCATAGCTTCTCTCATGACCATTTT CTCCACTAATGTATGGATCTATTCTGCCTTCAGATTCTTAAGTGGATTTGGCCGTGCAGCAATTGGAGCAACTGCTCTTGTGTTAGCCACTGAAAAGGTA GGAAGCAAATGGCGTGGCCAAATGGGAACTATTGCTGGAGTCTCCTTTGCATTAGGGCTATTATCTTTGCCAGTTCATCTTTTAGTACTCGAATCTCCCC GCTGGCTTTTCTTGCAAGGCCGCAAAGAAGCTGCTATGGCAATATTGAAAAGACTTGGTCCAACAAGCCTGAACTTGTGCTTACCCTACATTTCCCTCGA AAAGGAAGCACCAAAAACTAACCTCTACTCACCAATCAAGATTTTACTCGTGAGAAAATGGGCTCTTCAAAGGTTGTTAATTGTGATGCTAACAGGTTTT GGCATTGGAATTGTGTATTACAGCATGCCTTTAGCAGTGGGAAACCTGGGCTTCAACATCTACTTGAGTGTTGCATTCAATGCTTTAGCTGAAATACCAT CATACATCATCTTTTCCTTTATCGTAAGCAAATGGAGCAGAAAGGGATCTCTTCTTGCATTCACTACATTAGGTGGCATTTGCAGCATAATGTGCATCAT GAACTGGAAGGAAGTGGTGCTAATTGGACTGGAGCTGGTATCATACTTCAGTGCCTGTACAGCTTTTATTATGCTAATGATTTACACACTGGAATTGTTT CCAACGTGTGTCAGGAACGGAGCCTCGTCGATGGTAAGGCAAGCACCTGTATTTGGAGCTGTGTTTAGCCCAATTCTAATTTCTGCTGGGAGAAGTAACA AGGTCTTGTCATACGGGGTGTTTGGCTTGGTGATCTTGTGCTCTAGTGTGTTTGTTTTCTGTTTGCCAGAGACAAGAGGTGTGGCGCTTAGTGATACCAT GGATGAACAAGAAGAGAAAGAACAGCTTGCAATGGGGGGAATTAATGCTCAACTTGTTACAACTTTGACAGAGCAGCTCCAATATCGTCCTAATGAGGAA AGCCCATCTTTTGATGAGGTCCAAAGTCCTGTCATGATTGGGTTCATATATGCAAGAAAAAGCAACGTCTTCGGCCTGTATAATGTTGTTGAGACCATAA ACTGA
AA sequence Show only first row Show all	>Potri.016G039000.2 pacid=42809814 polypeptide=Potri.016G039000.2.p locus=Potri.016G039000 ID=Potri.016G039000.2.v4.1 annot-version=v4.1 MADSSPLLPPFLLAEPENSAVDEPQASLDSVVERVIGDFGWTQLVQSTLVLLSRFFDAQQTFISVYADSEPAWHCINNGMCNSSANICDLSKSSWAWNGH TYKTIISDWDLECASSFIKGLPASSFFLGCLLGGFVLGTLADTSLGRKNLLTLSCLIMSIASLMTIFSTNVWIYSAFRFLSGFGRAAIGATALVLATEKV GSKWRGQMGTIAGVSFALGLLSLPVHLLVLESPRWLFLQGRKEAAMAILKRLGPTSLNLCLPYISLEKEAPKTNLYSPIKILLVRKWALQRLLIVMLTGF GIGIVYYSMPLAVGNLGFNIYLSVAFNALAEIPSYIIFSFIVSKWSRKGSLLAFTTLGGICSIMCIMNWKEVVLIGLELVSYFSACTAFIMLMIYTLELF PTCVRNGASSMVRQAPVFGAVFSPILISAGRSNKVLSYGVFGLVILCSSVFVFCLPETRGVALSDTMDEQEEKEQLAMGGINAQLVTTLTEQLQYRPNEE SPSFDEVQSPVMIGFIYARKSNVFGLYNVVETIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.016G039000 [exp]	0	1
AT2G25280			unknown protein		Potri.006G258200 [exp]	3.16	0.7635
AT3G13600			calmodulin-binding family prot...		Potri.001G005600 [exp]	8.77	0.6801
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.018G049000 [exp]	9.69	0.7005	MYB178
AT3G58480			calmodulin-binding family prot...		Potri.016G063000 [exp]	13.85	0.7200
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	14.66	0.7028
AT4G15020			hAT transposon superfamily (.1...		Potri.018G145554 [exp]	21.23	0.7515
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.012G139600 [exp]	23.45	0.6652
					Potri.005G084100 [exp]	29.47	0.6797
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	32.31	0.7079
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	32.98	0.7086

Compare expression of checked genes

Potri.016G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.