Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41380 272 / 3e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G61210 157 / 2e-47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G54150 155 / 1e-45 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G10830 150 / 1e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G55450 151 / 2e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G22530 148 / 9e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042200 [exp] 410 / 7e-147 AT2G41380 342 / 1e-119 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G101800 [exp] 159 / 5e-48 AT4G22530 331 / 3e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103200 [exp] 155 / 1e-46 AT5G10830 376 / 5e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G066200 [exp] 153 / 7e-46 AT5G10830 339 / 2e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103400 [exp] 153 / 7e-46 AT4G22530 317 / 1e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G067500 [exp] 152 / 3e-45 AT5G10830 326 / 3e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001155 [exp] 316 / 1e-109 AT2G41380 330 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024476 [exp] 167 / 3e-51 AT5G10830 370 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10002994 [exp] 164 / 4e-50 AT5G10830 365 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.016G039051.1 pacid=42809271 polypeptide=Potri.016G039051.1.p locus=Potri.016G039051 ID=Potri.016G039051.1.v4.1 annot-version=v4.1 ATGGCAGAGTTGCCAAGTTATCCTCAAGAACTGTTCCAATTCATTGCCTCAAAAACTTCCTCTCGTGACCTTGTATGGGATGTTGGCACAGGAAGTGGGC AGGCTGCTCGATCGCTAGCTGGGATATACAAGCCTGTAACAGGAACAGACACAAGCCTGAAACAACTGGAATTTGCACCAAAACTTCCCAATGTGAGCTA CCACCATACGCCTTCAGTAATGTCAATGAGTGGACTTGAACAGACTCTGTCAACACAATCTAGTGTTGATCTAGTGACTGTTGCTCAAGCCATGCATTGG TTTGATCTCCATGCATTTTACCAACAAGTAAAATGGATACTCAAAAAACCTAATGGAGTCATTGCTGCTTGGTGCTACACAGTTCCTGAAGTCAATGACT CTGTAGACTCAGTCCTCAATCCATTTTACTCCATTGATTCTGATCCCTACTGGGAACCGCAGCTTAAATTGATCGACGACAAGTATATGAGCATTGATTT TCCCTTTGAGCCAGTTGAAGGAGCTGATCATACAGGACCATCCAAGTCATGGTCTGCGTATCAAACGGCCAAGACAAAGGGTGTGGAGCTACTGAGGGAT GATATGATTGAGAGTTTCAAGCGTGCTTGGAATGAAGATGGGCACGACGAAAAAGTCGTCAAGTTTCCTGTTTACCTGAGGATTGGCAAGGTGGGAAATG CATGA
AA sequence Show only first row Show all	>Potri.016G039051.1 pacid=42809271 polypeptide=Potri.016G039051.1.p locus=Potri.016G039051 ID=Potri.016G039051.1.v4.1 annot-version=v4.1 MAELPSYPQELFQFIASKTSSRDLVWDVGTGSGQAARSLAGIYKPVTGTDTSLKQLEFAPKLPNVSYHHTPSVMSMSGLEQTLSTQSSVDLVTVAQAMHW FDLHAFYQQVKWILKKPNGVIAAWCYTVPEVNDSVDSVLNPFYSIDSDPYWEPQLKLIDDKYMSIDFPFEPVEGADHTGPSKSWSAYQTAKTKGVELLRD DMIESFKRAWNEDGHDEKVVKFPVYLRIGKVGNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41380			S-adenosyl-L-methionine-depend...		Potri.016G039051 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141900 [exp]	3.74	0.8342
					Potri.005G091901 [exp]	4.24	0.8372
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.011G095600 [exp]	4.47	0.8175	GA2ox6,GA2.8
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041600 [exp]	4.58	0.8518	Pt-PR4.1
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.011G020900 [exp]	4.89	0.8075	ACO7,Pt-ACO1.3
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.009G031900 [exp]	5.74	0.8088
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.013G060000 [exp]	6.48	0.8000
AT5G57970			DNA glycosylase superfamily pr...		Potri.001G044402 [exp]	11.31	0.8219
					Potri.001G013101 [exp]	12.12	0.7691
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Potri.015G071900 [exp]	15.74	0.6844

Compare expression of checked genes

Potri.016G039051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.