Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50160 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) AT3G50150 108 / 8e-25 Plant protein of unknown function (DUF247) (.1) AT3G50120 106 / 5e-24 Plant protein of unknown function (DUF247) (.1) AT3G50130 99 / 1e-21 Plant protein of unknown function (DUF247) (.1) AT3G50170 98 / 3e-21 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 91 / 6e-19 Plant protein of unknown function (DUF247) (.1) AT3G50190 84 / 6e-17 Plant protein of unknown function (DUF247) (.1) AT5G22550 84 / 8e-17 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50180 84 / 1e-16 Plant protein of unknown function (DUF247) (.1) AT2G36430 83 / 1e-16 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042500 [exp] 475 / 6e-162 AT3G50120 108 / 8e-25 Plant protein of unknown function (DUF247) (.1) Potri.006G042300 [exp] 470 / 4e-160 AT3G50160 110 / 2e-25 Plant protein of unknown function (DUF247) (.1) Potri.016G039733 [exp] 356 / 2e-116 AT3G50120 120 / 6e-29 Plant protein of unknown function (DUF247) (.1) Potri.016G039700 [exp] 356 / 2e-116 AT3G50120 120 / 6e-29 Plant protein of unknown function (DUF247) (.1) Potri.016G039200 [exp] 167 / 2e-45 AT3G50150 151 / 4e-40 Plant protein of unknown function (DUF247) (.1) Potri.016G039300 [exp] 165 / 1e-44 AT3G50150 154 / 3e-41 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 164 / 2e-44 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.006G042946 [exp] 164 / 4e-44 AT3G50120 182 / 2e-51 Plant protein of unknown function (DUF247) (.1) Potri.016G039800 [exp] 145 / 2e-38 AT3G50180 127 / 4e-32 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 117 / 6e-28 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 105 / 7e-24 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 95 / 2e-20 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 93 / 1e-19 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 86 / 1e-17 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 85 / 3e-17 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 84 / 7e-17 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 82 / 2e-16 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 81 / 5e-16 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10004515 [exp] 77 / 6e-16 AT3G50120 112 / 4e-29 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.016G039100.1 pacid=42809069 polypeptide=Potri.016G039100.1.p locus=Potri.016G039100 ID=Potri.016G039100.1.v4.1 annot-version=v4.1 ATGTCTGAAACACATCTAAGTGAAATAAGGGTTGATCCATTGATCAACAAAGAGGAAGGGATTCATAACAACCAACCTCAAGAGCTGAAGATGGATGAAA CACTAGGAAATTACTCATTGAAAAAGAATGAGCGTTCTTCGTGGTTTAGTTCCATAATGACAGAGGTCAAAGACACTAAAAACAATCAGCCACCCGGGCC AAAGATTCCAAAAGTTTCAAACAAACTTAGAAATAAAAACGAGAAATGCTACAGTCCTGGGATGGTCTCAATTGGGCCTTATCACTATCCGGATAAAAAT CTCAGAGAAGCGGATCATCATAACAATCTCAGAGAAGCGGATAACAATCTCACAGAAGCGGATCATCATAACAATCTCAAAGAAGCGGAGATTCTAAAGT TTTCGATGGCTCGCCAATTCATCGTAGATAGTGGAAAAAGCATAGAACTCGTCTACAGAGAAGTAGAAGAGGGTATCCAAACCGCAAGAGAATTTTACAA CAAGATCGACATAATAGGCTATGATGACGAGCAATTCACCAAGATGATTTTTCTTGATGGATGCTTTATTCTCCAATTCATCCACTGTGTGACTCATAAT TATGAAAATTTAGAGATGACCGATCGGCAAGTTGCTGCTGTGAAGCGGGATTTGTTATTACTGGAGAACCAGATTCCTTTTCAAGTCCTGAAATCACTGA CGAGTCTGAGGTACGAAAAAGATGGAACCAATCATGGAATGAAACATGTGAATGATTTTCTTTTTTTCCATATTCTCAACCCGAAAGATCAACCATTGCG GACTCGAAAATTACTTTGGTCTACCGTTTGTCTCCTGTTATTGTTTCTTCCAATTGCTCTTCCATTTGTTTTATCACGCACGTTTATCGGTCATAATCAT GACCTGGTTTTCTTGAGCATGGTGCCACCATTTGCGATGATGCAATTATGTGTCTTGATACCAGCTTGGCTTTTGTGGTTACTACTAAGAAAGGGGAGGA AAGCCTCAGGATATGATTCGCAATGGCAGCCTGATGAAGAACCTGCCCATCTTCTTCAACTTCTATATTTTCTTTTCGTAGGTCCTCACAACATAAAAGG CAAGTCGTCTTCACGAAGATGCGGCCATTGCTTGTCTTATTTGGCCACATGTCTTAAGAAATTCATTCCTAGAAAGTACAAGACAGTTGTTGCTCAAGGA AGGCGTGGCCATTACCTGTATTATTCTGCCAAGGAACTTAAGAAGGTGGGAATCCATTTCATGTCTAGTCAGACTATTGCTTTGATGGATGTCAAGTTCA AGTCATCATATTTCCATGGAACATTGAAACTTCCTTCAATTACCATAGATGAGTCAACAAGGTCCATGCTCTTCAACCTAGTGGCCTTCGAAACATCTGC TGCACTCAATCCACTTCGGGTCACTTCTTACATATGTTTCATGGATTCGCTGATTGACGATGCCGATGACGTGAAAGAGCTGCGATCAAAGGGCATAATT GTTAATTTCCATGGACCCGACCAGCAGGTTGCGGATCTCTTCAACCATATGGGCCGTTTTCTTGAACCTGATACTAGTGTTTATAATGATGTTAAAAGAG AGATAAATGAGCAGTGTGAGAGCATCGTGAAGAAATGGGTAGCTCAGTGGCACCAAACTTATTTTCAGAGTCCTTGGGCCTTCATTGCAGTTGCTGCCGC CGCTGTTGGTTTGGCTCTTACCGCCACTCAGACGTACTATGCAATGCACCCACGTGACCCACCCAAGACGAATTCAACAGAATGTGCCAATGCACCCACG TGA
AA sequence Show only first row Show all	>Potri.016G039100.1 pacid=42809069 polypeptide=Potri.016G039100.1.p locus=Potri.016G039100 ID=Potri.016G039100.1.v4.1 annot-version=v4.1 MSETHLSEIRVDPLINKEEGIHNNQPQELKMDETLGNYSLKKNERSSWFSSIMTEVKDTKNNQPPGPKIPKVSNKLRNKNEKCYSPGMVSIGPYHYPDKN LREADHHNNLREADNNLTEADHHNNLKEAEILKFSMARQFIVDSGKSIELVYREVEEGIQTAREFYNKIDIIGYDDEQFTKMIFLDGCFILQFIHCVTHN YENLEMTDRQVAAVKRDLLLLENQIPFQVLKSLTSLRYEKDGTNHGMKHVNDFLFFHILNPKDQPLRTRKLLWSTVCLLLLFLPIALPFVLSRTFIGHNH DLVFLSMVPPFAMMQLCVLIPAWLLWLLLRKGRKASGYDSQWQPDEEPAHLLQLLYFLFVGPHNIKGKSSSRRCGHCLSYLATCLKKFIPRKYKTVVAQG RRGHYLYYSAKELKKVGIHFMSSQTIALMDVKFKSSYFHGTLKLPSITIDESTRSMLFNLVAFETSAALNPLRVTSYICFMDSLIDDADDVKELRSKGII VNFHGPDQQVADLFNHMGRFLEPDTSVYNDVKREINEQCESIVKKWVAQWHQTYFQSPWAFIAVAAAAVGLALTATQTYYAMHPRDPPKTNSTECANAPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50160			Plant protein of unknown funct...		Potri.016G039100 [exp]	0	1
AT4G02550			unknown protein		Potri.010G215600 [exp]	4.89	0.9326
AT1G68820			Transmembrane Fragile-X-F-asso...		Potri.010G129932 [exp]	7.48	0.9375
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.009G048500 [exp]	7.93	0.9252
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	8.48	0.9265
AT1G27170			transmembrane receptors;ATP bi...		Potri.006G282100 [exp]	16.97	0.9164
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.003G216651 [exp]	23.66	0.9045
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Potri.008G186300 [exp]	24.20	0.8435	ERF61
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	25.07	0.9136
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.012G106500 [exp]	26.73	0.8906
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.001G291166 [exp]	28.01	0.8630

Compare expression of checked genes

Potri.016G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.