Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 167 / 3e-46 Plant protein of unknown function (DUF247) (.1) AT3G50180 165 / 7e-45 Plant protein of unknown function (DUF247) (.1) AT3G50170 156 / 9e-42 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 152 / 1e-40 Plant protein of unknown function (DUF247) (.1) AT3G50130 151 / 4e-40 Plant protein of unknown function (DUF247) (.1) AT3G50160 149 / 1e-39 Plant protein of unknown function (DUF247) (.1) AT3G50140 142 / 5e-37 Plant protein of unknown function (DUF247) (.1) AT2G36430 134 / 2e-34 Plant protein of unknown function (DUF247) (.1) AT3G50190 130 / 9e-33 Plant protein of unknown function (DUF247) (.1) AT5G22540 126 / 8e-32 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G039866 [exp] 776 / 0 AT3G50180 164 / 2e-44 Plant protein of unknown function (DUF247) (.1) Potri.016G039800 [exp] 593 / 0 AT3G50180 127 / 4e-32 Plant protein of unknown function (DUF247) (.1) Potri.016G040000 [exp] 544 / 0 AT3G50180 147 / 5e-38 Plant protein of unknown function (DUF247) (.1) Potri.006G042873 [exp] 478 / 1e-166 AT3G50180 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Potri.006G042800 [exp] 476 / 1e-165 AT3G50120 155 / 2e-41 Plant protein of unknown function (DUF247) (.1) Potri.016G039601 [exp] 469 / 1e-162 AT3G50170 153 / 2e-40 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G039600 [exp] 465 / 5e-161 AT3G50170 149 / 4e-39 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G040100 [exp] 344 / 3e-114 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.016G039300 [exp] 332 / 1e-109 AT3G50150 154 / 3e-41 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011501 [exp] 158 / 1e-42 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 137 / 1e-35 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 132 / 1e-33 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 127 / 3e-32 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 126 / 8e-32 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 125 / 4e-31 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 124 / 1e-30 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 113 / 5e-27 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 112 / 7e-27 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 109 / 9e-26 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.016G039500.1 pacid=42810222 polypeptide=Potri.016G039500.1.p locus=Potri.016G039500 ID=Potri.016G039500.1.v4.1 annot-version=v4.1 ATGGGAGAAACACGTATTTTAGTCCCAGAAAATAATAATTGGTTAGGATCCATAATGAGCGTTGAGCGGACAGAGACCTTGAGCCAGCAGCAAGGGCCTA GAATTCGAAGGGTTCCACAGATATTTAGTGGGATTGAATCGAACAAGAAATGTTACGAACCCATGGTGGTCTCCATAGGTCCTTACTACCACGGGAAGCT TGATGGGTTCCTGGAGATGGAGAAGTCTAAATGCAATATGGTGCGCGGATTTGTGCAACAGAGTGGGAAACACAATATTGAAGAGTTGAACAAAACCGTG GAGGATGTGGCTGAAGTGGCGAGAAGATGCTATGATGAGGATGAATCAGTTATACTCAATGACATGACCGAATTCACCAAGATGATGTTTCTTGATGGTT GCTTTGTTATCCAATTCATGCACTGTCTACTTCGTGACCATCAAAATCTGAAGATGTCTAGTCACTTTGCAGCTTTAGTTGCACGAGACATGTTCTTACT AGAGAACCAACTCCCTTTTGTAGTCCTCAGGTCATTGATGAAGTTGAGATTCGGATCAGATGAAGAAGGGATAAAATTGATCAAGGATTTCATTAAGCAC ATTCGAGCAATGCCCCGTCAACGAGTGTCATGCAGGAAAAAGATATCAAAGTTCTTCAGCAAAACTATTCCGCGAAGAGCAATATCAAACTATTCCGCAA AAGACCCAGAAATGGGAGAGTACTATGGTGCCAGCCATCTCCTTGAACTCTTTCATATGCATTTTGTAACTTCTGTTGATAAGAACGTCACTGTTGATAG TTCACGGACAAGCTTGTATCGTTATCATCCTGCGATGGACCTTAGAAGGGTGGGAATCCATTTCAAGCCTAGCAAAACCAGCCAGTTCACTGATGTCCAG TTCAAACCAACATGGCTAGCTGGGAGACTCCAAATTCCTGCACTAACAATAGACGACTCAACCAAGCCCTTACTCTTAAACTTGGTTGCCTACGAAGCAT GCCTCGGTGACAATGACAAACTTTGGGTCACTTCTTACATATGCTTCATGGATTCACTAATTGATCAGCCTGAAGATGTGAGAGAGTTGCGCTCACAGGG TGTACTCATCGTTACCCTCGGAAGTGAAGAAGAAGTCGCGAGACTCTTCAATGAGGTAGCCAATTATTTAGTGCCCAATCCTCTTGCTTTCAACAAAGTT AAAAAGGACATCGAATCACATTGTAGGAACACCTTCAAGCGATGGATCCTTCATTACAAGGGTCCGATTTATACTGTGATTTTTAAGTATTCTTTTATTT TTGGGCTCATAGTAAGTGCCCTGAAGTACGTGAAAGTGTTTCCAGCGGAACCCCTATATGGTGTCTGCAGATTGCCAGGCAATAACAGTACCCTATACCC TTAA
AA sequence Show only first row Show all	>Potri.016G039500.1 pacid=42810222 polypeptide=Potri.016G039500.1.p locus=Potri.016G039500 ID=Potri.016G039500.1.v4.1 annot-version=v4.1 MGETRILVPENNNWLGSIMSVERTETLSQQQGPRIRRVPQIFSGIESNKKCYEPMVVSIGPYYHGKLDGFLEMEKSKCNMVRGFVQQSGKHNIEELNKTV EDVAEVARRCYDEDESVILNDMTEFTKMMFLDGCFVIQFMHCLLRDHQNLKMSSHFAALVARDMFLLENQLPFVVLRSLMKLRFGSDEEGIKLIKDFIKH IRAMPRQRVSCRKKISKFFSKTIPRRAISNYSAKDPEMGEYYGASHLLELFHMHFVTSVDKNVTVDSSRTSLYRYHPAMDLRRVGIHFKPSKTSQFTDVQ FKPTWLAGRLQIPALTIDDSTKPLLLNLVAYEACLGDNDKLWVTSYICFMDSLIDQPEDVRELRSQGVLIVTLGSEEEVARLFNEVANYLVPNPLAFNKV KKDIESHCRNTFKRWILHYKGPIYTVIFKYSFIFGLIVSALKYVKVFPAEPLYGVCRLPGNNSTLYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50150			Plant protein of unknown funct...		Potri.016G039500 [exp]	0	1
AT1G65810			P-loop containing nucleoside t...		Potri.004G077600 [exp]	2.23	0.9625
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.005G138800 [exp]	4.24	0.9408
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.001G453600 [exp]	6.63	0.8806
AT5G11620			SWIM zinc finger family protei...		Potri.006G238000 [exp]	6.92	0.9309
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107000 [exp]	8.48	0.9186
AT3G50180			Plant protein of unknown funct...		Potri.016G039800 [exp]	10.58	0.9133
AT5G45540			Protein of unknown function (D...		Potri.015G107500 [exp]	13.85	0.9097
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099200 [exp]	14.49	0.9197
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.005G122700 [exp]	16.94	0.9158
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.017G139500 [exp]	17.02	0.9117

Compare expression of checked genes

Potri.016G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.