Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50170 120 / 7e-29 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 120 / 7e-29 Plant protein of unknown function (DUF247) (.1) AT3G50160 108 / 4e-25 Plant protein of unknown function (DUF247) (.1) AT3G50140 107 / 2e-24 Plant protein of unknown function (DUF247) (.1) AT3G50150 103 / 3e-23 Plant protein of unknown function (DUF247) (.1) AT3G50130 100 / 4e-22 Plant protein of unknown function (DUF247) (.1) AT3G50180 97 / 5e-21 Plant protein of unknown function (DUF247) (.1) AT5G22560 88 / 2e-18 Plant protein of unknown function (DUF247) (.1) AT4G31980 87 / 7e-18 unknown protein AT2G36430 86 / 7e-18 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G039700 [exp] 1030 / 0 AT3G50120 120 / 6e-29 Plant protein of unknown function (DUF247) (.1) Potri.006G042300 [exp] 353 / 1e-115 AT3G50160 110 / 2e-25 Plant protein of unknown function (DUF247) (.1) Potri.016G039100 [exp] 338 / 3e-109 AT3G50160 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Potri.006G042500 [exp] 327 / 1e-105 AT3G50120 108 / 8e-25 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 215 / 8e-64 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.016G039200 [exp] 188 / 9e-54 AT3G50150 151 / 4e-40 Plant protein of unknown function (DUF247) (.1) Potri.016G039300 [exp] 180 / 8e-51 AT3G50150 154 / 3e-41 Plant protein of unknown function (DUF247) (.1) Potri.006G042946 [exp] 170 / 5e-47 AT3G50120 182 / 2e-51 Plant protein of unknown function (DUF247) (.1) Potri.016G040000 [exp] 164 / 2e-44 AT3G50180 147 / 5e-38 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 130 / 2e-32 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 113 / 8e-27 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 113 / 2e-26 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 108 / 4e-25 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 106 / 1e-24 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 106 / 3e-24 AT4G31980 180 / 2e-49 unknown protein Lus10039777 [exp] 103 / 1e-23 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 102 / 5e-23 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 97 / 3e-21 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10004515 [exp] 91 / 1e-20 AT3G50120 112 / 4e-29 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.016G039733.1 pacid=42810067 polypeptide=Potri.016G039733.1.p locus=Potri.016G039733 ID=Potri.016G039733.1.v4.1 annot-version=v4.1 ATGTCCGAAACTGTTAACAATGATGCCCGTTCTGCTTCCTCTGAACCTCATTGGCTGATAGAGATTATGAATGCTGCGGAGGAAGATACCTCTCATGATG ACAACCAACGGAAAGGGCCAGATTTCCCAAAGGTTCCACCAACGCTTCGTGATATTCAACAAAACAGCGATTGTTACGATCCATCGGTGGTCTCCATTGG TCCCTATCACCATGGGAAGAAAAAACTAGAGGAAATGGAGAAGCTCAAGGAGACATACGCTCGCCAGTTCGTCAAAGATAAAGATAAACCCAATGAACAA ATATACGGAAAGGTGGAAGCAGTGCTAAGCATCGCAAGAAATTCCTATCCAGAAGACGTAACATACAATTTAAACGATGAGAAATTCAACAAGATGATGT TTATTGATGGCTGTTTCATTCTCCAATTCATGCACTATCTGATTGGTGAAAATGAAGTATTGAAGATGTCAGATCAACAAATTTTTCACGTGAAACGGGA CTTGTTATTATTGGAGAACCAACTTCCTTTTGCAGTCTTGCATTCATTGAGGAGACAGAGGTATGGGGATAATCTAAGTAATTCAAATGAAATCATCAAT AATTTTATCTCTCTTCATAACCGCTCGTCCAGTAAACCAATTCCAACATGGGTCCGGATAGCCTTAACTTCATTAGAGCTGGTTATGATCCCAATCATAT TTCCTTTATCTGTTATAATCGCTTGTTGTTGTGTTTGTTTATTTTATAAATGCTTGAGCTATCAATGGGCAACACACTTGCTAAGAGGACAGAGTGTGTC TTTGGATTGGTCACCACCACCACCTAGAGGGAAGTCAGGGACAAGAGATGATGAGCCTCAGCCTGCCCATCCACCACCAACTAGAAAGGAGAAGTCAGGG ACAAGAGATGATGAGCGTCTGCCTGCCCATCTCCTTGAACTTCTATATTACAAATCCATGTATCACTATTCCAAAAGCAACCATAAAAAGGCCGCGAAAG GAAGCCGGGGTCATTGCTTGTATTATTCTGCCAAGAATCTTAAAAAGGCGGGAATCCTTTTTCGGGCGAGATGGACTGGTGCTATCACCGATGTCAAATT CAAGTCATCAATTTTCTGGGGAACACTGAAAGTTCCTCCAATTATCATAGAGGAGTCAACCAAGTCCCTGCTCTTAAACTTGGTGGCCTATGAAACATCT GCTGCTCTTGATCAACTTTGGGTCAGTTCATACATATGCTTCATGGATTCTTTGATTGACGATGCTAAAGATGTGGAGGAGCTGCGGTCTAATGGCATAA TTATCAATTATTTCGGAGCCGACCAGAAAGTCGCAAATCTCTTCAATGATATGGGAATATCAATGACACATGATACTGCTGCTTATAATGATATCAAAAT GGAAATCAATGAGCAGTGTGAGAGCACAGTGAAAAGATGGGTGTATGAGTGGAAGAGAACTTATTTTAGTAATCCCTGGACCATTATTACAGTTCTTGCT GCATCTTTCGGATTGGCACTTACTGCCACTCAGACCTATTACACAAGATACCCACCTAAGTAA
AA sequence Show only first row Show all	>Potri.016G039733.1 pacid=42810067 polypeptide=Potri.016G039733.1.p locus=Potri.016G039733 ID=Potri.016G039733.1.v4.1 annot-version=v4.1 MSETVNNDARSASSEPHWLIEIMNAAEEDTSHDDNQRKGPDFPKVPPTLRDIQQNSDCYDPSVVSIGPYHHGKKKLEEMEKLKETYARQFVKDKDKPNEQ IYGKVEAVLSIARNSYPEDVTYNLNDEKFNKMMFIDGCFILQFMHYLIGENEVLKMSDQQIFHVKRDLLLLENQLPFAVLHSLRRQRYGDNLSNSNEIIN NFISLHNRSSSKPIPTWVRIALTSLELVMIPIIFPLSVIIACCCVCLFYKCLSYQWATHLLRGQSVSLDWSPPPPRGKSGTRDDEPQPAHPPPTRKEKSG TRDDERLPAHLLELLYYKSMYHYSKSNHKKAAKGSRGHCLYYSAKNLKKAGILFRARWTGAITDVKFKSSIFWGTLKVPPIIIEESTKSLLLNLVAYETS AALDQLWVSSYICFMDSLIDDAKDVEELRSNGIIINYFGADQKVANLFNDMGISMTHDTAAYNDIKMEINEQCESTVKRWVYEWKRTYFSNPWTIITVLA ASFGLALTATQTYYTRYPPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50120			Plant protein of unknown funct...		Potri.016G039733 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Potri.016G039700 [exp]	5.19	0.8865
AT5G05240			Uncharacterised conserved prot...		Potri.013G091100 [exp]	11.09	0.8581
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G029100 [exp]	11.13	0.8026
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	12.40	0.8766
AT1G73240			unknown protein		Potri.003G213050 [exp]	16.58	0.8378
					Potri.001G207600 [exp]	20.19	0.7856
AT4G26550			Got1/Sft2-like vescicle transp...		Potri.014G170700 [exp]	20.49	0.8296
					Potri.015G135100 [exp]	22.00	0.8128
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	22.29	0.8340
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	23.49	0.8378

Compare expression of checked genes

Potri.016G039733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.