Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50180 126 / 6e-32 Plant protein of unknown function (DUF247) (.1) AT3G50170 123 / 4e-31 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 120 / 4e-30 Plant protein of unknown function (DUF247) (.1) AT3G50120 116 / 1e-28 Plant protein of unknown function (DUF247) (.1) AT3G50140 114 / 4e-28 Plant protein of unknown function (DUF247) (.1) AT3G50130 113 / 2e-27 Plant protein of unknown function (DUF247) (.1) AT3G50160 110 / 1e-26 Plant protein of unknown function (DUF247) (.1) AT3G50190 105 / 1e-24 Plant protein of unknown function (DUF247) (.1) AT4G31980 103 / 7e-24 unknown protein AT5G22540 87 / 1e-18 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G039866 [exp] 723 / 0 AT3G50180 164 / 2e-44 Plant protein of unknown function (DUF247) (.1) Potri.016G039500 [exp] 592 / 0 AT3G50150 167 / 3e-46 Plant protein of unknown function (DUF247) (.1) Potri.016G040000 [exp] 459 / 2e-160 AT3G50180 147 / 5e-38 Plant protein of unknown function (DUF247) (.1) Potri.006G042873 [exp] 403 / 3e-139 AT3G50180 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Potri.016G039601 [exp] 392 / 3e-134 AT3G50170 153 / 2e-40 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G039600 [exp] 392 / 3e-134 AT3G50170 149 / 4e-39 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.006G042800 [exp] 384 / 5e-131 AT3G50120 155 / 2e-41 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 288 / 5e-94 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.015G019000 [exp] 264 / 2e-84 AT3G50160 127 / 1e-31 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 116 / 9e-29 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 112 / 2e-27 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 111 / 3e-27 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 110 / 7e-27 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 111 / 1e-26 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 104 / 1e-24 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 102 / 1e-23 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 96 / 2e-21 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 91 / 5e-20 AT4G31980 180 / 2e-49 unknown protein Lus10027719 [exp] 91 / 6e-20 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.016G039800.1 pacid=42810581 polypeptide=Potri.016G039800.1.p locus=Potri.016G039800 ID=Potri.016G039800.1.v4.1 annot-version=v4.1 ATGATGGGCTCAAAGAGATGGAGAAGATGCTATGTTGAGGATGAATCATTTAAACTCGTTGGCATGACCGAATTCACCATGATGATGTTTCTTGATGGTT GCTTTGTTATCCAATTCATGTACTGTCTACTTTGTGACCATGAAAATCTGAAGATGTCTAGTCACGTTTCAGCTATGGTTACACGAGACATGCTCTTACT AGAGAACCAACTCCCTTTTCTAGTCCTCAGGTCATTGATGAAGTTGAGATTCGAAGATGAAGGAGGGATGAAATTGATCAAAGGTTTCATCAAGCACATT CGAGCAATGCCCCGTCAACGAGACTCGTGCAGGAAGAGAATATCAAAGTTCTTCCGCAAAATTATTATGCGAGGAGCATTGAACTTAACTACTCCAAAAG GCCTAGCAATGGAAGAGTACTATGTTGCCAGCCATCTCCTTGAACTCTTTCATATGCATTTTGTTGACAAGGACGCCCCAGTTGATAGTTCAAAGACAAC CTTGTATCGTTATCATCCTGCGACGGAGCTTAGAAGGGTGGGAATCCATTTCAATCCTAGCAAAACCAGTCAGCTCACTGATGTCCAGTTCAAACCAACA TGGCTAGCTGGGAGACTCCAAATTCCTCCACTAACCATAGACGACTCGACCAAGTCCATACTTTTAAACTTGGTGGCCTACGAAGCATGCCTCGGTGACA ATAAAAAACTTTGGGTCACTTCTTACATATGCTTCATGGATTCACTAATTGATCAGCCTGAAGATGTGAGGGTGTTGCGCTCACAGGGTGTACTCATCGT TACCCTCGGAAGTGAAGAAGAAGTCGCGAAACTCTTCAATGAGGTAGCCAATTATTTAGTGCCCAATCCTCGTGTTTTCAACAAAGTTAAAAAGGACATC GAATCACATTGTAGGGACACCTTCAAGCGATGGATCCTTCATTACAAGGGTCCGATTTATACTGTGATTTTTAAGTATTCTTTTATTTTTGGCCTCATAG TAAGTGCCCTGAAGTACGTGAAAGTGTTTCCAGCGGAACCCTTATATGGTGTCTGCAGACAGGGGCGGAGCTAG
AA sequence Show only first row Show all	>Potri.016G039800.1 pacid=42810581 polypeptide=Potri.016G039800.1.p locus=Potri.016G039800 ID=Potri.016G039800.1.v4.1 annot-version=v4.1 MMGSKRWRRCYVEDESFKLVGMTEFTMMMFLDGCFVIQFMYCLLCDHENLKMSSHVSAMVTRDMLLLENQLPFLVLRSLMKLRFEDEGGMKLIKGFIKHI RAMPRQRDSCRKRISKFFRKIIMRGALNLTTPKGLAMEEYYVASHLLELFHMHFVDKDAPVDSSKTTLYRYHPATELRRVGIHFNPSKTSQLTDVQFKPT WLAGRLQIPPLTIDDSTKSILLNLVAYEACLGDNKKLWVTSYICFMDSLIDQPEDVRVLRSQGVLIVTLGSEEEVAKLFNEVANYLVPNPRVFNKVKKDI ESHCRDTFKRWILHYKGPIYTVIFKYSFIFGLIVSALKYVKVFPAEPLYGVCRQGRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50180			Plant protein of unknown funct...		Potri.016G039800 [exp]	0	1
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.005G138800 [exp]	2.23	0.9416
AT5G65207			unknown protein		Potri.005G081400 [exp]	4.69	0.9386
AT4G34880			Amidase family protein (.1)		Potri.004G171300 [exp]	8.06	0.9161
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050300 [exp]	8.36	0.9277
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.004G082400 [exp]	9.74	0.9076
AT3G50150			Plant protein of unknown funct...		Potri.016G039500 [exp]	10.58	0.9133
AT1G03670			ankyrin repeat family protein ...		Potri.019G101500 [exp]	10.58	0.9315
AT5G45480			Protein of unknown function (D...		Potri.006G011100 [exp]	12.24	0.9284
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.019G128200 [exp]	12.64	0.9266
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	13.03	0.9307

Compare expression of checked genes

Potri.016G039800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.