Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) AT3G50160 161 / 7e-44 Plant protein of unknown function (DUF247) (.1) AT3G50120 158 / 1e-42 Plant protein of unknown function (DUF247) (.1) AT3G50180 157 / 3e-42 Plant protein of unknown function (DUF247) (.1) AT3G50170 154 / 4e-41 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50130 147 / 2e-38 Plant protein of unknown function (DUF247) (.1) AT3G50140 145 / 4e-38 Plant protein of unknown function (DUF247) (.1) AT3G50190 127 / 9e-32 Plant protein of unknown function (DUF247) (.1) AT4G31980 116 / 1e-27 unknown protein AT2G36430 110 / 3e-26 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042873 [exp] 376 / 5e-127 AT3G50180 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Potri.006G042800 [exp] 377 / 1e-126 AT3G50120 155 / 2e-41 Plant protein of unknown function (DUF247) (.1) Potri.016G039601 [exp] 376 / 4e-126 AT3G50170 153 / 2e-40 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G039600 [exp] 371 / 4e-124 AT3G50170 149 / 4e-39 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G040000 [exp] 351 / 3e-116 AT3G50180 147 / 5e-38 Plant protein of unknown function (DUF247) (.1) Potri.016G039300 [exp] 342 / 1e-113 AT3G50150 154 / 3e-41 Plant protein of unknown function (DUF247) (.1) Potri.016G039200 [exp] 332 / 1e-109 AT3G50150 151 / 4e-40 Plant protein of unknown function (DUF247) (.1) Potri.016G039866 [exp] 331 / 3e-109 AT3G50180 164 / 2e-44 Plant protein of unknown function (DUF247) (.1) Potri.016G039500 [exp] 323 / 5e-106 AT3G50150 167 / 3e-46 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 160 / 6e-44 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 151 / 8e-41 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 146 / 5e-39 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 142 / 5e-37 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 137 / 1e-35 AT4G31980 251 / 5e-76 unknown protein Lus10009871 [exp] 134 / 2e-34 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 133 / 6e-34 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 133 / 1e-33 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 132 / 2e-33 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 126 / 2e-31 AT4G31980 180 / 2e-49 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.016G040100.1 pacid=42809601 polypeptide=Potri.016G040100.1.p locus=Potri.016G040100 ID=Potri.016G040100.1.v4.1 annot-version=v4.1 ATGTCCGACAGTACTGTTAACAATGATGCCCGTTCTGCTTCCTCTAAAAATTGTCAGTTGCTGATACAGATAATGAATGCTGAGGCAGAAGGGACCACTC ATGATGACAACCAACGGAAAGGGCGACATTTCCCGAAGGTTCCATTAACGTTTCGTGATATTCAACAAAACAGCGATTCTTACCATCCATCGGTGGTCTC CATTGGTCCCTATCACCATGGGAAGGAAAAACTAAAGGAAATGGAGAAGCTCAAGGTTACATACGCTCGTCAGTTCGCATTAGATAATGAAAAACCCATT GATCAAATATACAGAGAGGTGGACGCAGTGGTAAGCAATGCAAAAAATTGCTATCCAGAAGACGCAAGAAAAAATCTCAACGACGAGCAATTTGCCGTGA TGATGTTTCTTGATGGTTGCTTCATTGTCCAATTCCTCTTCTGCCTCTATCAGCAGCCTGGAAATCTGAAGATGAGTAGTCACGATGCTGCTTTGGTAAT AAAGGACTTGTTCTTACTCGAGAACCAACTCCCTTTTGAAGTTCTCACCGAATTGATGAGTTTCAGAAACCGGGATCACAAAGCTCAGATGAAAATTCTT ACAGCTTTCTGCGATCAAGTTCGTGCCTTTCCTGCTGGAACAGAGCTCAAGGAAAAGATAACAAAAATTTTTCGTGAATTGCAAAAATCAATAACGATAG GAAATTCCCAAGGTCCCGCACCTGATCAGCCTGCAGCCCATCTTCTTGAACTTTTACATAATCAGTTTTGCTCCAGAACGATTGTATCAGAAAACTCTGA GAAGAATTCGTGCAAGAACAATTCTCAAATGAACTGGTACCGTTATTGTCCTGCTGAGGAGCTTAGGAACATTGGCATCCATTTCAAGCCAAGCAAGACT GGTCTTTTCACCGATGTCCAGTTCAAACGGGGATGGCTGATCACTCGAAGTCTCTATATTCCTCCATTAAGAATAGATAGTTCTACCAAGTCCTTGCTTT TAAACTTGGTGGCCTATGAAGCATGCCATAATAAATCTCGGGTCACTTCTTACGTATGCTTCATGGATTCATTGATTGATACCCCTAGAGACGTGCAGGT GCTGCGATCGAAGGGCATACTCCTCAACACTCTAGGAAGTGATGAACTAGCCGCAGAACTCTTCAACCAGATAGCCAGCCATTTGAAACCCGATCCTTAT GCTTACATTCAGGTTAAATCCAGCATTGACAAGGAGCATAGGAAAGTCCTAAAGAAATGGTTAGCCATGTGGCTGCGAGTTTATTTTAATAGTCCATGGA CCTTTATTGCATTTGTTGCTGCAACTTTTACCATCATACTAACTGCCATTCAGACCTATATAGCACTATTCCCTCTCAAGGATCGGTGA
AA sequence Show only first row Show all	>Potri.016G040100.1 pacid=42809601 polypeptide=Potri.016G040100.1.p locus=Potri.016G040100 ID=Potri.016G040100.1.v4.1 annot-version=v4.1 MSDSTVNNDARSASSKNCQLLIQIMNAEAEGTTHDDNQRKGRHFPKVPLTFRDIQQNSDSYHPSVVSIGPYHHGKEKLKEMEKLKVTYARQFALDNEKPI DQIYREVDAVVSNAKNCYPEDARKNLNDEQFAVMMFLDGCFIVQFLFCLYQQPGNLKMSSHDAALVIKDLFLLENQLPFEVLTELMSFRNRDHKAQMKIL TAFCDQVRAFPAGTELKEKITKIFRELQKSITIGNSQGPAPDQPAAHLLELLHNQFCSRTIVSENSEKNSCKNNSQMNWYRYCPAEELRNIGIHFKPSKT GLFTDVQFKRGWLITRSLYIPPLRIDSSTKSLLLNLVAYEACHNKSRVTSYVCFMDSLIDTPRDVQVLRSKGILLNTLGSDELAAELFNQIASHLKPDPY AYIQVKSSIDKEHRKVLKKWLAMWLRVYFNSPWTFIAFVAATFTIILTAIQTYIALFPLKDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50150			Plant protein of unknown funct...		Potri.016G040100 [exp]	0	1
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	2.44	0.9277	Pt-SAH7.2
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	3.87	0.9367	Pt-RGP3.4
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	6.00	0.9205
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	6.00	0.9123
AT5G11160		APT5	adenine phosphoribosyltransfer...		Potri.006G255900 [exp]	7.14	0.8661	Pt-APT2.2
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.016G001950 [exp]	8.66	0.8561
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.005G218400 [exp]	9.79	0.8842
AT3G50120			Plant protein of unknown funct...		Potri.016G039700 [exp]	9.89	0.8984
					Potri.001G389650 [exp]	10.00	0.8863
AT3G14880			unknown protein		Potri.007G098800 [exp]	15.96	0.8222

Compare expression of checked genes

Potri.016G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.