Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATGLDH.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47930 794 / 0 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043232 [exp] 166 / 4e-48 AT3G47930 182 / 1e-54 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.018G039600 [exp] 49 / 1e-05 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 45 / 0.0002 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178300 [exp] 43 / 0.0005 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035411 [exp] 804 / 0 AT3G47930 939 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Lus10031013 [exp] 799 / 0 AT3G47930 932 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Lus10038620 [exp] 55 / 1e-07 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 52 / 9e-07 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 48 / 2e-05 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF04030 [poplar] [flax] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Potri.016G040300.1 pacid=42809433 polypeptide=Potri.016G040300.1.p locus=Potri.016G040300 ID=Potri.016G040300.1.v4.1 annot-version=v4.1 ATGTCAAGAGCCCTCTCTCTTAGACGCTCCCTTCTCCACCTCCACCACCACCGCCCAAAACCACTCTCCCCCACAACCCCACCACCCCCAAAACCCATAC AAAACCCCTTTTCCCCACTAAACCCAGCTCGCAAATTCTGCACATCCCCTACTCCAACTCCATCAACAAACTCTGAAGTCCGCAAATACATAGGCTACAC AGCCCTTGTTATTTTCTGTGGTGCTGCCACTTACTACTCCTTCCCGTTTCCTGGCAACGCAAAACACAAAAAGGCTCAGCTTTTCAGGTATGCTCCATTA CCTGAAGACCTTCACACAGTTTCTAACTGGAGTGGAACCCATGAGGTCCAAACCAGAAACTTTTACCAGCCAGAAAATATTGAACAGTTGGAGAAGTTGG TGAAAGAGAATAATGAAAAGAAGGCTCGGATCCGACCTGTTGGGTCCGGGTTGTCTCCAAATGGGATCGGGTTGGCTCGGTCTGGGATGGTGAATTTGGC TCTTATGGATAAGGTTTTGGAGGTGGATAAGGAGAAAAGGAGAGTTAGAGTTGAAGCTGGTATAAGGGTTCAAGAATTGGTTGATGGGATTAAAGAATAT GGTCTTACTTTGCAGAATTTTGCTTCCATTAGAGAACAGCAGATTGGTGGCATTGTTCAGGTTGGTGCACATGGTACTGGTGCCAGGTTGCCACCGATTG ATGAGCAGGTGATTAGCATGAAATTGGTTACCCCTGCCAAAGGAACAATAGAGATTTCAAAAGAGAAAGATCCAGAACTATTTTATCTTGCTCGTGTTGG TCTTGGAGGACTTGGAGTGGTTTCTGAAGTTACTTTACAATGTGTGGAGAGACAAGAGCTCGTAGAACACACGTTTATTTCAAACATGAAAGATATCAAG AAAAACCACAAGAAATTGCTATCTGAGAATAAGCATGTGAAATACCTGCATATTCCATATACGGACGCTGTTGTGGTTGTGACGTGCAACCCTGTCTCAA AATGGAAAGGTCCACCCAAATACAAACCCAAGTATACTACAGATGAAGCCCTACAACATGTTCGTGACCTCTTCAAGGAGTCCCTTGAAAAGTACAGAAT TGCTGCTGCTAAATCATCAGATGATAATGAACCAGACATAAATGAGCTTTCATTCACAGAGCTAAGAGATAAACTGCTTGCTCTTGATCCTCTCAACAAA GACCATGTCGTAAAGATTAATCGTGCTGAGGCTGAGTTCTGGAGGAAGTCAGAGGGATATAGGGTGGGATGGAGTGATGAAATTTTGGGCTTTGATTGCG GTGGTCAACAGTGGGTCTCAGAAAATTGTTTCCCTGCTGGTACCCTTGCCAAGCCAAGCTTGAAAGACCTTGAATTCATAGAGAAGCTGAAGCAGCTCAT AGAGAAAGAAGAGATACCTGCACCTGCTCCCATAGAGCAGCGATGGACAGCTCGCAGCCAGAGCTCCATGAGCCCAGCCTCAAGCTCAGCAGAGGATGAT ATATTCTCATGGGTTGGTATTATCATGTATCTTCCTACAATGGATGCCCGCCAAAGAAAGGAAATCACAGAAGAGTTCTTCCATTATAGGCATCTGACTC AGGTGGAGTTGTGGGATAAGTATTCTGCTTATGAACATTGGGCTAAAATCGAGGTTCCGAAGGACAAGGATGAGCTTGCAGCTCTTAGAGAAAGGTTGAG AAGGCGTTTTCCTGTGGATGCATATAACAAGGCAAGGAAAGAATTGGACCCCAACAAGATCCTTTCTAACAATATGCTGGAAAAGCTGTTCCCATTATCG GAAACAAATTGA
AA sequence Show only first row Show all	>Potri.016G040300.1 pacid=42809433 polypeptide=Potri.016G040300.1.p locus=Potri.016G040300 ID=Potri.016G040300.1.v4.1 annot-version=v4.1 MSRALSLRRSLLHLHHHRPKPLSPTTPPPPKPIQNPFSPLNPARKFCTSPTPTPSTNSEVRKYIGYTALVIFCGAATYYSFPFPGNAKHKKAQLFRYAPL PEDLHTVSNWSGTHEVQTRNFYQPENIEQLEKLVKENNEKKARIRPVGSGLSPNGIGLARSGMVNLALMDKVLEVDKEKRRVRVEAGIRVQELVDGIKEY GLTLQNFASIREQQIGGIVQVGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARVGLGGLGVVSEVTLQCVERQELVEHTFISNMKDIK KNHKKLLSENKHVKYLHIPYTDAVVVVTCNPVSKWKGPPKYKPKYTTDEALQHVRDLFKESLEKYRIAAAKSSDDNEPDINELSFTELRDKLLALDPLNK DHVVKINRAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSENCFPAGTLAKPSLKDLEFIEKLKQLIEKEEIPAPAPIEQRWTARSQSSMSPASSSAEDD IFSWVGIIMYLPTMDARQRKEITEEFFHYRHLTQVELWDKYSAYEHWAKIEVPKDKDELAALRERLRRRFPVDAYNKARKELDPNKILSNNMLEKLFPLS ETN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.016G040300 [exp]	0	1	Pt-ATGLDH.1
AT5G62270			unknown protein		Potri.007G133900 [exp]	5.29	0.8188
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	7.74	0.8445
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Potri.010G066000 [exp]	8.66	0.8036
AT1G02370			Tetratricopeptide repeat (TPR)...		Potri.014G119000 [exp]	9.59	0.8284
AT4G32605			Mitochondrial glycoprotein fam...		Potri.010G244500 [exp]	10.39	0.8030
AT1G71490			Tetratricopeptide repeat (TPR)...		Potri.019G074700 [exp]	10.90	0.8031
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G149800 [exp]	11.18	0.8231
AT1G56350			Peptide chain release factor 2...		Potri.013G009200 [exp]	11.66	0.8180
AT1G20230			Pentatricopeptide repeat (PPR)...		Potri.002G021300 [exp]	12.24	0.8405
AT3G02330			Pentatricopeptide repeat (PPR)...		Potri.004G111300 [exp]	19.33	0.7951

Compare expression of checked genes

Potri.016G040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.