Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10200 164 / 8e-49 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04060 160 / 2e-47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 119 / 3e-32 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 118 / 5e-32 Putative methyltransferase family protein (.1) AT1G77260 114 / 2e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23300 113 / 3e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 113 / 4e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G45750 110 / 2e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 110 / 3e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 109 / 9e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043600 [exp] 179 / 2e-54 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 123 / 7e-34 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 117 / 7e-32 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 114 / 2e-30 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 113 / 4e-30 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G184500 [exp] 113 / 4e-30 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G147600 [exp] 110 / 2e-29 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 106 / 7e-28 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 106 / 9e-28 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038973 [exp] 170 / 5e-51 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 169 / 7e-51 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 114 / 2e-30 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 114 / 2e-30 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 113 / 4e-30 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 112 / 5e-30 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003656 [exp] 109 / 9e-29 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022291 [exp] 109 / 9e-29 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10008298 [exp] 108 / 1e-28 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 107 / 3e-28 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.016G040632.1 pacid=42810150 polypeptide=Potri.016G040632.1.p locus=Potri.016G040632 ID=Potri.016G040632.1.v4.1 annot-version=v4.1 ATGACAGGTGATCTGCGTTCAGCTGGGGTTGTTCAAGTTGTGTATGTTGGCTGTGGCGTTGCTAGCTTCTCAGCTTATCTTCTTCCTTTGGACATACAAA CAATGTCTTTTGCTCCCAAAGATGGTCGTGAAAATCAGATTCAGTTTTCTTTAGAACGAGGAATTGGTGCCATGACTGCTGCCATTACCACAAAACAGCT ACCATATCCCTCAAGCTCTTTTGAGATGGTTCATTGTTCGAGGTGTTGTGTTGACTGGCATGAGAATGATGGTATTTTACTCAAAGAAGTTAATCGTCTT TTGCGAGATAATGGATATTTGTCTATTCAGCTCCACGTGTTTATAGAAAGGATAAAGATTATCCATTAA
AA sequence Show only first row Show all	>Potri.016G040632.1 pacid=42810150 polypeptide=Potri.016G040632.1.p locus=Potri.016G040632 ID=Potri.016G040632.1.v4.1 annot-version=v4.1 MTGDLRSAGVVQVVYVGCGVASFSAYLLPLDIQTMSFAPKDGRENQIQFSLERGIGAMTAAITTKQLPYPSSSFEMVHCSRCCVDWHENDGILLKEVNRL LRDNGYLSIQLHVFIERIKIIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10200			S-adenosyl-L-methionine-depend...		Potri.016G040632 [exp]	0	1
AT2G34930			disease resistance family prot...		Potri.015G025300 [exp]	18.84	0.7317
					Potri.006G120901 [exp]	19.79	0.7545
AT3G53270			Small nuclear RNA activating c...		Potri.004G126720 [exp]	27.27	0.7258
					Potri.005G256201 [exp]	29.66	0.7125
					Potri.004G191742 [exp]	31.52	0.7017
					Potri.019G024466 [exp]	46.28	0.6912
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.012G141400 [exp]	47.32	0.6567
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050120 [exp]	49.29	0.7130
					Potri.002G022002 [exp]	55.64	0.6442
AT4G36050			endonuclease/exonuclease/phosp...		Potri.005G113301 [exp]	57.54	0.6252

Compare expression of checked genes

Potri.016G040632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.