Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10190 176 / 2e-55 Calcium-binding EF-hand family protein (.1) AT2G41410 173 / 2e-54 Calcium-binding EF-hand family protein (.1) AT1G66400 83 / 8e-20 CML23 calmodulin like 23 (.1) AT1G24620 83 / 1e-19 EF hand calcium-binding protein family (.1) AT3G59440 77 / 2e-17 Calcium-binding EF-hand family protein (.1) AT2G15680 76 / 5e-17 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT3G07490 75 / 7e-17 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT2G43290 76 / 1e-16 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT1G18210 74 / 2e-16 Calcium-binding EF-hand family protein (.1.2) AT3G22930 74 / 3e-16 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043700 [exp] 302 / 4e-105 AT2G41410 176 / 2e-55 Calcium-binding EF-hand family protein (.1) Potri.014G070700 [exp] 88 / 2e-21 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.005G215700 [exp] 77 / 5e-18 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.017G029700 [exp] 79 / 1e-17 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.008G134300 [exp] 77 / 2e-17 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.010G107100 [exp] 76 / 7e-17 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.004G089400 [exp] 74 / 1e-16 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.012G041000 [exp] 73 / 3e-16 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 73 / 3e-16 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038970 [exp] 184 / 1e-58 AT2G41410 166 / 7e-52 Calcium-binding EF-hand family protein (.1) Lus10027261 [exp] 184 / 1e-58 AT2G41410 168 / 2e-52 Calcium-binding EF-hand family protein (.1) Lus10001775 [exp] 86 / 4e-21 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10014050 [exp] 80 / 2e-18 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10019863 [exp] 79 / 4e-18 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10024830 [exp] 77 / 2e-17 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10018012 [exp] 76 / 8e-17 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009176 [exp] 74 / 2e-16 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10004330 [exp] 73 / 4e-16 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10027701 [exp] 74 / 7e-16 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13405 [poplar] [flax] EF-hand_6 EF-hand domain CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.016G040900.1 pacid=42808920 polypeptide=Potri.016G040900.1.p locus=Potri.016G040900 ID=Potri.016G040900.1.v4.1 annot-version=v4.1 ATGCAACTCATAAAAAAACTCAGCCCGAAACGATGGTTCAGCTCCAAAAAAGACCGATCCGAGCTATCAAGATCAGAACCATCGTCGTTTAGCTCAGGTA CCGCCTCCTCCGATGCCTCCGATTCCTCCATCTCTAACGTCAAGGCAAATTCCGCTGCAGCCAACGCTGGTTTTCGGACTCCTACTAGTGTTTTGCCACA AATATCGGGTGACTGGTCCGATATGTCGACCGATTTTTATTTCGAGTTGACCCAGGCTTTCAAGGTAATTGACAGAGATAACGACGGCCTTGTCTCGAGA AACGAGCTGGAGGCTCTTCTTACCCGGCTTGGGGCCGAGCCGCCCAGCAGCCAGGAGATGGCCGTTATGTTAGGTGAGGTGGACCTTATTAGTGTCGAGG AACTTGCGAGTCGTCTCGGGTCGGCTTGCGAGCCGGCTGGGGGTGACGAGCTGAGAGACGCCTTTGTGTTTTTTGATTCGGATCGTGACGGAAAGATAAC GGCAGAGGAATTATTAAATGTTTACAAGGCATTTGGCGACGAAAAGTGCACGTTAGAGGACTGCAAGGGTATGATAGCAGTGGTTGATAAGAACGGAGAT GGGTTTGTGTGCTTTGAGGACTTTTGTCGTATGATGGAACTGCAGAGATGA
AA sequence Show only first row Show all	>Potri.016G040900.1 pacid=42808920 polypeptide=Potri.016G040900.1.p locus=Potri.016G040900 ID=Potri.016G040900.1.v4.1 annot-version=v4.1 MQLIKKLSPKRWFSSKKDRSELSRSEPSSFSSGTASSDASDSSISNVKANSAAANAGFRTPTSVLPQISGDWSDMSTDFYFELTQAFKVIDRDNDGLVSR NELEALLTRLGAEPPSSQEMAVMLGEVDLISVEELASRLGSACEPAGGDELRDAFVFFDSDRDGKITAEELLNVYKAFGDEKCTLEDCKGMIAVVDKNGD GFVCFEDFCRMMELQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10190			Calcium-binding EF-hand family...		Potri.016G040900 [exp]	0	1
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098200 [exp]	7.48	0.8638
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	7.61	0.8897
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	10.00	0.8826
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	14.49	0.8725
AT1G19020			unknown protein		Potri.012G075800 [exp]	15.29	0.8761
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.015G086800 [exp]	15.49	0.8605
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	16.15	0.8608
					Potri.016G103900 [exp]	17.83	0.8352
AT5G43260			chaperone protein dnaJ-related...		Potri.001G056601 [exp]	18.00	0.8738
AT5G13090			unknown protein		Potri.003G168500 [exp]	19.33	0.7930

Compare expression of checked genes

Potri.016G040900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.