Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04040 1176 / 0 SDP1 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) AT3G57140 1066 / 0 SDP1-LIKE sugar-dependent 1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043800 [exp] 1504 / 0 AT5G04040 1205 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038968 [exp] 1208 / 0 AT5G04040 1224 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) Lus10027259 [exp] 1153 / 0 AT5G04040 1168 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase CL0323 [poplar] [flax] PF11815 [poplar] [flax] DUF3336 Domain of unknown function (DUF3336)
Representative CDS sequence Show only first row Show all	>Potri.016G041000.7 pacid=42810398 polypeptide=Potri.016G041000.7.p locus=Potri.016G041000 ID=Potri.016G041000.7.v4.1 annot-version=v4.1 ATGGATATAAGCAATGAGGCCAATGTTGATCATTTCAAAATTGGACCTTCATCAATCATTGGTAGGACAATTGCTTTCAGAGTTCTATTCTGCAATTCAA TCTCACATTTTAGGCATAAAATCTTTCATGTGCTGTTGAATTACATTTATAGATTTGGTGACTTCGTGGCACCTATGTTTTCATGGTTTCATCCAAGGAA TCCACAAGGGATATTGGTCATGATGACGATAATTGCATTTTTATTGAAACGATATACTAATGTTAAGTTGAGGGCAGAAACAGCCTATAGGAGGAAATTT TGGAGGAATATGATGAGAACTGCGTTGACATATGAGGAGTGGTCTCATGCTGCTAAGATGCTCGATAAAGAGACCCCAAAGATGCATGAATGTGATCTTT ACGATGAAGAACTAGTCAGGAACAAGCTTCAAGAGCTCCGCCACCGTCGCCAAGAGGGATGTCTTAGAGATATAATCTTCTGTATGAGAGCTGATCTTGT AAGAAACCTCGGAAATATGTGCAACCCTGAGCTTCACAAGGATAGGCTTCAAGTGCCGAAGCTCATAAAGGAATATATTGATGAGGTCTCAACTCAGTTA AGAATGGTTTGTGACTCCGATTCAGAGGAGCTTTCATTGGAAGAAAAGCTTGCTTTCATGCATGAAACAAGACATGCTTTTGGGAGAACAGCATTGCTTC TGAGTGGAGGTGCTTCTCTTGGAGCCTTTCATGTGGGTGTGGTGAAAACACTGGTGGAGCATAAGCTTGTGCCCCATATAGTCGCTGGTTCTAGTGTTGG GTCCATTATGTGTGCAGTTGTTGCCACCAGGTCATGGCCAGAGCTGCAAAGTTTTTTTGAGGATTCCTGGCACTCATTGCAGTTTTTTGATCAATTGGGT GGAATTTTCACTGTTGTTAAGAGGGTCATGAGACAAGGAGTTGTTCATGAAATCCGGCAGTTGCAATGGATGTTAAGGAATCTTACAAGTAATCTTACAT TTCAAGAAGCTTATGACATGACAGGTCAAATTCTTGGGATCACAGTTTGCTCACCCAGGAAGCACGAGCCCCCTAGATGCCTTAATTACCTGACTTCCCC TCATGTCGTTATATGGAGTGCAGTCACTGCTTCTTGCGCCTTTCCTGGTCTTTTTGAAGCTCAGGAACTAATGGCAAAGGACAGGAGTGGAGAAATTGTG CCTTATCACCCACCTTTTAATCTGGATCCTGAGGAGGGATCAGGTGCACCAATGCGTAGGTGGAGGGATGGTAGCCTGGAGATTGATTTGCCAATGATAC AATTGAAAGAACTATTCAATGTCAATCATTTTATTGTTAGTCAGGCAAATCCTCACATCGCCCCGTTGTTGAGACTGAAGGATATAGTGAGGGCATATGG AGGTAGCTTTGCTGCCAAGCTTGCTCATCTCACTGAGATGGAGGTAAAACATAGGTGCAATCAGGTATTGGAACTTGGTTTTCCATTAGGTGGACTTGCC AAGCTTTTTGCGCAAGATTGGGAGGGTGATGTCACTGTTGTTAATACTGCCACTCTCGCTCAGTACTCAAAAATTATACAAAACCCAACTCATGTGGAAC TTCAAAAGGCATCCAACCTAGGCAGAAGGTGCACGTGGGAGAAGCTTTCTGCCATAAAAGCTAATTGTGGCATTGAGCTTGCTCTTGATGAGTGCGTGGC TATTCTGAACCACATGCGTAGACTCAAAAGGAGTGCTGAGAGGGCTGCTGCTGCTTCTCATGGCCAAGCAAGCTCTGCGAGCACATTGAAATTTAGTGCA TCAAAAAGAATTCCTTCTTGGAATTGCATTGCTCGAGAAAACTCAACAGGCTCACTTGAAGAAGACCTCCTTGTTGATGTTGCTTCCACATTCCATCAAG GAGTTGGTGTGGCTGCAGGAACTTCTACTGGTAGGAGTTTGAGAACTCAACGTAACCTACATCATGATGGAAGTGATAGTGAATCGGAGGGTGTAGATTT GAATTCTTGGACAAGATCTGGTGGGCCTTTGATGAGGACTACTTCTGCAAATAAGTTCATTGACTTTGTCCAAAGTCTGGATGTGGATTCTGAGCTCACC AAAGGTTTTGTGTGTCATCCTAACTCTCCTGGTGCTCAGATGGGAGACAGGGATTTATATAATCAGATCTCCAGATTGTCAACCCCAGATAGAAACTCAG AAAGTGAATTCGATCCGAGAGATTTTAGCAATAGAATTTCTCCAGGTGGTTCTAGCATTACAGTCACCGAAGGAGATCTTTTGCAGCATGAAAGAATCCT TAATGGGTTTGTGCTGAATGTTGTAAAGAAAGAGGACATGGCGCCATCCAATAGGGTCCACGATAAGGAAAATCACAATAGTGAAGTTCCTGAATGTGTT CAGCTTGATTGTCCTGAAAAGGACATGGATGCTAGCTCATCATCAGACTCTGCTGCAGATGACGATGATGATCCCTCCCCATCAAATCCCTTGCAAAGGA CAGCTTCTACTCTTAGTCACACAGATGATCCAGTCATTCAGGATGTTCAGGAGAAGCATGTCGTGGATGGTTAA
AA sequence Show only first row Show all	>Potri.016G041000.7 pacid=42810398 polypeptide=Potri.016G041000.7.p locus=Potri.016G041000 ID=Potri.016G041000.7.v4.1 annot-version=v4.1 MDISNEANVDHFKIGPSSIIGRTIAFRVLFCNSISHFRHKIFHVLLNYIYRFGDFVAPMFSWFHPRNPQGILVMMTIIAFLLKRYTNVKLRAETAYRRKF WRNMMRTALTYEEWSHAAKMLDKETPKMHECDLYDEELVRNKLQELRHRRQEGCLRDIIFCMRADLVRNLGNMCNPELHKDRLQVPKLIKEYIDEVSTQL RMVCDSDSEELSLEEKLAFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHKLVPHIVAGSSVGSIMCAVVATRSWPELQSFFEDSWHSLQFFDQLG GIFTVVKRVMRQGVVHEIRQLQWMLRNLTSNLTFQEAYDMTGQILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIV PYHPPFNLDPEEGSGAPMRRWRDGSLEIDLPMIQLKELFNVNHFIVSQANPHIAPLLRLKDIVRAYGGSFAAKLAHLTEMEVKHRCNQVLELGFPLGGLA KLFAQDWEGDVTVVNTATLAQYSKIIQNPTHVELQKASNLGRRCTWEKLSAIKANCGIELALDECVAILNHMRRLKRSAERAAAASHGQASSASTLKFSA SKRIPSWNCIARENSTGSLEEDLLVDVASTFHQGVGVAAGTSTGRSLRTQRNLHHDGSDSESEGVDLNSWTRSGGPLMRTTSANKFIDFVQSLDVDSELT KGFVCHPNSPGAQMGDRDLYNQISRLSTPDRNSESEFDPRDFSNRISPGGSSITVTEGDLLQHERILNGFVLNVVKKEDMAPSNRVHDKENHNSEVPECV QLDCPEKDMDASSSSDSAADDDDDPSPSNPLQRTASTLSHTDDPVIQDVQEKHVVDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.016G041000 [exp]	0	1
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.002G079600 [exp]	3.74	0.7149
AT1G05790			lipase class 3 family protein ...		Potri.014G150800 [exp]	8.48	0.7415
AT5G22850			Eukaryotic aspartyl protease f...		Potri.001G213600 [exp]	9.16	0.7194
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053366 [exp]	10.67	0.7541
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.002G139600 [exp]	11.26	0.7648
					Potri.006G273733 [exp]	13.85	0.7602
AT2G01690			ARM repeat superfamily protein...		Potri.010G106700 [exp]	15.19	0.6958
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	16.09	0.7438
					Potri.006G177250 [exp]	19.20	0.7399
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Potri.013G039600 [exp]	22.91	0.7578

Compare expression of checked genes

Potri.016G041000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.