Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04020 114 / 4e-25 calmodulin binding (.1) AT2G38800 101 / 9e-22 Plant calmodulin-binding protein-related (.1) AT3G54570 80 / 4e-15 Plant calmodulin-binding protein-related (.1) AT5G39380 44 / 0.0005 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043900 [exp] 1629 / 0 AT5G04020 145 / 6e-35 calmodulin binding (.1) Potri.003G201400 [exp] 113 / 5e-25 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1) Potri.001G024100 [exp] 110 / 3e-24 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1) Potri.015G049600 [exp] 45 / 0.0002 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035417 [exp] 196 / 5e-51 AT5G04020 129 / 3e-30 calmodulin binding (.1) Lus10031023 [exp] 189 / 4e-49 AT5G04020 127 / 9e-30 calmodulin binding (.1) Lus10039544 [exp] 97 / 3e-20 AT3G54570 121 / 9e-29 Plant calmodulin-binding protein-related (.1) Lus10024175 [exp] 97 / 5e-20 AT3G54570 119 / 6e-28 Plant calmodulin-binding protein-related (.1) Lus10030701 [exp] 47 / 0.0001 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [poplar] [flax] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G041100.1 pacid=42809912 polypeptide=Potri.016G041100.1.p locus=Potri.016G041100 ID=Potri.016G041100.1.v4.1 annot-version=v4.1 ATGATGCCTGCGAAGCTTGGAACTGAAGTTGATTCTGATTATTCCTCCTCGTCTGAAAGTTCATCTATGAGCAGTGGATCATCATCATCATCATCATGTT ATCAGAATGAAGATGTTGGCAATGAGGGAGGAAGAGAGCTGAAGAGGAAAGTAAAGAAGCTAAGATCAATCAAGCTTGCAAGATTGCCAAGCTTGAAACT CATCACAAGACAATCTAAAGTCAAATCTGGTGATGTTTCTGTTCTGTCTAGTGATGTAGCAAGCTCGCATCATTCACGCATGTCACCAAATTATATGAGG ACCACCACTTCTTCAAATGCAAAGAAAGAGAATTTGCAGAAATCAGCAAGAACATTGGCGAGGCGATCTAGTTTTAAACCTGCAAAGAGTTTGACGAGGT TGTCTAGTACAAAATTCAGGAGACCTTTGATGAGGATATCTCCTGGAGGCACTGACCTGAAGAAAAAACTGAAGAAGTCAAGATCAACCAAGATTGCCAA TCGATCTTCCATGGTTTTAGCCAGTGATGCTGATATACCACCTGATTTTTCGAAGGCAAGTTTTGATGGGAGAAACGTTCAGCTTCAGGCAAGTCTCCAC AATTTTGAATCTGCTTTGAGTGGTAATGATGATAATAGGAAAATACCAAGGAATTCGAAGCCAAAATTAGCTTCTCCTGGTAACAATTCTATGAGAGTCA TGACAAGAACTTCCACTTTGAGACCTGTAAGGATCTTAACAAAAGTGGCTAGCATAAGAACAAAGAGACCATCCATGAAGAAGCGTTCTCAAATCCCAGA CTCGGGCATACAGAAAGCCACCTGTTCCTCGGCTATCAAGGACTCCAAGTTTCCATACCATCTTGAGCTGCAACCAGAAGGAAGGGAATCTGAAGGAAAT TCAGCTATGGAGGTTTGTCCATACAGTTATTGCTCACTTCACGGCCATCACCATTCTGATGTACCTCCACTAAAACGCTTTGTATCAATTAGGCGACGTC TGTTAAGGAACCAAAAAAGCATGAAATCAGAAAGCCGATCCTCTCGAAGATTAAAACGTTCTGGCAATGCAAAGAAGGGAACTCGGACAAGTCAACTGCC TTCTTGTGGAGATTCAGCAGTTCTAGAAACATCTCATGACAAGATAGCTGTATCTTCTTCCATTGGCAAAACAGCTGGACCAAGATCTGAGTCAACGAAA GAAGGTGCTCATGGTGGAGATGACAAAGACACCAGCAATGTTATGAGTGTCACTGACATTCAAATTCTTCAGCAAGAAGCTGATGAAGGTAGGATTGAAA ATTTGAACTTGGATGTGCTCAAAATTCACTCAAACACTGCTAAGGCTGATGCATCAACAAGTGTAGCCGATGAACAACTAAATAAAGCCAGAAGGCTAAA CCAGAATAGAGTTGTGGAGTCTAGAGACATCAACAACATGGTCTCTTTAGCTTCCATCGGTAAGCCATTGCAAGAGGAAACAGCAGCCAGTGAAGAAAAT AACCAAGATGTTGTGCAAAATTATCAGTTCCTAAGTTCAGATTCTGAGCATGGATACGCCATAGATGTAAGCCACGAAACTCAGAAGGAAAAACAGAAGC ATATGGGATTGTGGAACCTAATATATCAGCACATGGAAACAGGTATTGCCACAGAAAATGGAGCCCAGCCACCTCTCAATAAAAAAACCACGGAAGAAGA GAAAGATGAGAACACATTGCCTGGCATCAACAAATCTGGTTCTTTTCAGGATTTTTCTAGTACAGATCAGAGCAACGATGAGGAAGATCATGATGAACAC AGTGGAAAAATTCACCAATACCAATGTAATGCCATTAAGTTGGTGCAAGAAGCATTTGATAGAATACTGGCAGAAATTCCTGACCAGTCATCTGATGATC AATCAATTACTGGTGACACTTCAGACAAGGAGCTTGCAGTGAAGGATCAAAGTGAAGATGGGCAATTAAGCATCTTGACTTCCTATGATTCAGACGGAGA CAGCATAGTTCAGGAACCAGAAGAATTGAGGCTCAAAGCTGATAATGCCTTTGAAAGAGAGAAAGCACAATCAAGGGTGGAAAGCAAGTCTAACCAGCAA ATGCCCAAGAGCTGGAGTAATCTGAAAAAGATACTTATCCTCAAGAGATTTGTCAAGGCATTGGAAAAGGTGAGGAACTTCAATCCACAGAAGGCACGGT TTCTACATGCAGAGGCTGAACTAGGATCAGAAAAAGTTCATCTGCGCCATCAAAACTTGGAGGAGAGAAAAAATTCTGAGCAATGGATGCTTGATCATGC ACTTCAACAGGTTATTTCTACACTAGCCCCAGCTCAAAAGAGAAAGGTAGCTCTGCTTGTACGAGCATTTGAGACCGTCACCCCGCTCACTGAAGTTTGT ACTTCACCAAGGTTCAACATAGAAGCTTCTTCTCATACAACTCCAGTTAAGACCTGCAATGGTGCCTCTGACTGCAACGGGTCCATAGAAGGAAAAGAAA CTACTTTTGGAATCACTCTTCGTAAGACATCAAGCCTTGACACAATCGCATCAAGCACTTCGTCATTGGAGAACACTGTTGCAGACTTGAAGAACCAATT TGTTGCTCTCAATCTTGGTAATGATGAAACTAATTCCATTATCAAAGACAATGAACCTGATTTTGTCAACCACTGTTTGGTTGAGGATACAGAATCTAAG TTATGTGACAGGCCCTTGCCAAATACAGCTGATGCTCTACGAGCTCCTACTGAGGAACTTGTGGTAAATGGGGAAGTTCTCCCAGAGGATGCCAAAGGAG CAAGTTCAGTTTCTGCCTCGGAGGTTTATGATCGTGATTTAGGATTAAGCAGCCAAAATTCAGACACCAATAACCAAAACAACAGAATTTATGATGAATC AGATGAACCTGACGGCCAAACCCCAAAAGATAACGAGGGTTCCATTGCCAATACCAATGTGGTTTCTTCATCTACAGTTTCTGCACCGGTAGAGGAATCA TCTGAAGTTACTGGAGAAGAGAATAAGCTCAAAAATAAGTTTCTCCAAGGGTCCACCTTGCTTCACGAATCAGAACCAGGTTGCACAACTGATGTAGCAC ATGAAAAGCAGAAACATATGAAGTTCTGGTTCTTGATATATAAGCACATAGTATCAGGTAATGCGACACTTATTGAAGGAGCAGATAAGGAAGAACAAGG GGATGATGGCAACACGTTGGCTGAAATGAAATCATCGAAGAATGATGATGCGGACAACCAAAAAATTAAACTCCAACAGATGGAAGCCATAAGGCTGGTG GAAGAAGCAATTGACCAAATTCCTCTTCCTGAAATTCAAGATGACGCGCCTGTTTATCAATCAGTTGCCAGTGACATAACTCAAGACCAGGATCAGGAGT ATATTGAAAAGAAACCCAAGGAAGGAGAGAAACCATTCATCTCATCTTCCTTTGAGCACACCAGTGACAGCTTTGGAGAATCTGACAGCACAGAAGCAGA GGAGAGCACCACACTGTATCAACAAGAATCGCAGCTCAATTTTGATAACATCAGTGCACAAGAAAAGACAAAACCAATACCAACAGAAGGAAACAAACCA AAGCCAGCTGCGCAAAAGAACTGGAGCAATCTGAAAAAGGTGGTCCTCCTCAAGAGATTTGTCAAGGCATTGGAGAAGGTGAAAAAAATCAATCAACAGG AGCCACGATTTCTGCCCTTGGACCCTTTAAGTGAAGCTGAAAAGGTTCATCTAAGGCACCAAGACACGGATGACAGGAAAAATGCTGATGAATGGATGCT TGATTATGCACTTCGACAGGTCGTTGCTAAACTGACTCCAGCTCGGAAAAGAAAAGTGTCATTGCTTGTAGAAGCCTTTGAGGCAGTCACCCCTATTGGA AGTGGAGAGTGGTCAGATACATGA
AA sequence Show only first row Show all	>Potri.016G041100.1 pacid=42809912 polypeptide=Potri.016G041100.1.p locus=Potri.016G041100 ID=Potri.016G041100.1.v4.1 annot-version=v4.1 MMPAKLGTEVDSDYSSSSESSSMSSGSSSSSSCYQNEDVGNEGGRELKRKVKKLRSIKLARLPSLKLITRQSKVKSGDVSVLSSDVASSHHSRMSPNYMR TTTSSNAKKENLQKSARTLARRSSFKPAKSLTRLSSTKFRRPLMRISPGGTDLKKKLKKSRSTKIANRSSMVLASDADIPPDFSKASFDGRNVQLQASLH NFESALSGNDDNRKIPRNSKPKLASPGNNSMRVMTRTSTLRPVRILTKVASIRTKRPSMKKRSQIPDSGIQKATCSSAIKDSKFPYHLELQPEGRESEGN SAMEVCPYSYCSLHGHHHSDVPPLKRFVSIRRRLLRNQKSMKSESRSSRRLKRSGNAKKGTRTSQLPSCGDSAVLETSHDKIAVSSSIGKTAGPRSESTK EGAHGGDDKDTSNVMSVTDIQILQQEADEGRIENLNLDVLKIHSNTAKADASTSVADEQLNKARRLNQNRVVESRDINNMVSLASIGKPLQEETAASEEN NQDVVQNYQFLSSDSEHGYAIDVSHETQKEKQKHMGLWNLIYQHMETGIATENGAQPPLNKKTTEEEKDENTLPGINKSGSFQDFSSTDQSNDEEDHDEH SGKIHQYQCNAIKLVQEAFDRILAEIPDQSSDDQSITGDTSDKELAVKDQSEDGQLSILTSYDSDGDSIVQEPEELRLKADNAFEREKAQSRVESKSNQQ MPKSWSNLKKILILKRFVKALEKVRNFNPQKARFLHAEAELGSEKVHLRHQNLEERKNSEQWMLDHALQQVISTLAPAQKRKVALLVRAFETVTPLTEVC TSPRFNIEASSHTTPVKTCNGASDCNGSIEGKETTFGITLRKTSSLDTIASSTSSLENTVADLKNQFVALNLGNDETNSIIKDNEPDFVNHCLVEDTESK LCDRPLPNTADALRAPTEELVVNGEVLPEDAKGASSVSASEVYDRDLGLSSQNSDTNNQNNRIYDESDEPDGQTPKDNEGSIANTNVVSSSTVSAPVEES SEVTGEENKLKNKFLQGSTLLHESEPGCTTDVAHEKQKHMKFWFLIYKHIVSGNATLIEGADKEEQGDDGNTLAEMKSSKNDDADNQKIKLQQMEAIRLV EEAIDQIPLPEIQDDAPVYQSVASDITQDQDQEYIEKKPKEGEKPFISSSFEHTSDSFGESDSTEAEESTTLYQQESQLNFDNISAQEKTKPIPTEGNKP KPAAQKNWSNLKKVVLLKRFVKALEKVKKINQQEPRFLPLDPLSEAEKVHLRHQDTDDRKNADEWMLDYALRQVVAKLTPARKRKVSLLVEAFEAVTPIG SGEWSDT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04020			calmodulin binding (.1)		Potri.016G041100 [exp]	0	1
					Potri.006G088664 [exp]	7.07	0.7522
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.004G069300 [exp]	9.11	0.7602
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G071200 [exp]	10.24	0.7493	Pt-EXT.6
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.014G146100 [exp]	10.58	0.7237	Pt-XTR7.1
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.008G041800 [exp]	10.67	0.7428
					Potri.018G018700 [exp]	21.54	0.7056
					Potri.006G088500 [exp]	22.27	0.7472
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.015G100800 [exp]	24.49	0.7455
					Potri.006G088616 [exp]	27.11	0.7417
AT4G40050			Protein of unknown function (D...		Potri.005G072200 [exp]	35.72	0.6726

Compare expression of checked genes

Potri.016G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.