Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57200 745 / 0 unknown protein AT3G08550 700 / 0 ABI8, ELD1, KOB1 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) AT2G41451 682 / 0 unknown protein AT3G61030 117 / 5e-28 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 116 / 2e-27 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G045500 [exp] 810 / 0 AT3G57200 646 / 0.0 unknown protein Potri.003G202900 [exp] 711 / 0 AT3G08550 699 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.001G022700 [exp] 705 / 0 AT3G08550 749 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018036 [exp] 748 / 0 AT3G57200 705 / 0.0 unknown protein Lus10042032 [exp] 716 / 0 AT3G57200 681 / 0.0 unknown protein Lus10039569 [exp] 686 / 0 AT3G08550 781 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024181 [exp] 618 / 0 AT3G08550 684 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10000243 [exp] 253 / 5e-82 AT3G08550 255 / 3e-83 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024182 [exp] 62 / 3e-11 AT3G08550 114 / 2e-30 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01697 [poplar] [flax] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Potri.016G041900.1 pacid=42810466 polypeptide=Potri.016G041900.1.p locus=Potri.016G041900 ID=Potri.016G041900.1.v4.1 annot-version=v4.1 ATGGCGGGTTCAAGACCCACCACCTCAATATCACAAACATCTTCTGCCAATGTTTTTACTTCGCGTTTATTATTACTTCTAACTCTTCTTCCATTAACCT TAGCCGCTTTTGCATTTCTTCTTCAATGGCGGGGCGGGTTGACCGACCCCATTACCCGGTGGTCTCCTGATCACCACGAGTTTCCCGGAATGGAATCTAC CAGTGGGTCGATTAAGGATACGGTTAGGAATTCGGGTTCGGGGTGTACGGATCTTCTGGGTCAGAGTCATTCCCTTTCCTTTCCTTATTTTCGTGATTGG AAATTCGGGTTCGGGTCGGATCTGAAACCCAAGATATGTATAACAACAAGCACCTCTGCTGGCTTAGAGCAGACTTTACCATGGATTTTTTATCACAAGG TTATGGGAGTCTCAACTTTTTTTCTTTTTGTGGAGGGGAAAGCTGCCTCCCCCACTGTATCTAAAGTCTTGGAAACGATTCCGGGGGTAAAAGTTATATA CAGAACAAGAGAATTAGAGGAACAACAAGCTAAAAGTCGGATCTGGAATGAGACTTGGTTGGCAAGCTTCTTCTACAAACCATGTAACTACGAGCTATTT GTGAAGCAATCCCTCAATATGGAAATGGCTATTGTCATGGCAAGGGAGGCGGGTATGGACTGGATTATCCATCTTGACACCGATGAGCTCATTCATCCTG CTGGAGCTCGTGAATATTCCTTGAGACAGTTGCTCTCAGATGTGCCTGGAAATGTTGATATGGTTATCTTTCCAAATTACGAGAGCAGTGTTGAGCGAGA TGATATCAAGGAACCTTTTAGTGAGGTCTCAATGTTCAAGAAGAACTATGACCATCTTCCCAAAGATGTATACTTTGGAAATTATAAGGAAGCAACCCGT GGTAATCCAAACTATTTTCTGACATATGGGAATGGGAAATCTGCTGCTCGTATTCAAGATCATCTTCGTCCTAATGGCGCACACAGATGGCATAACTATA TGAAAACACCCAATGAGGTTAAATTGGAGGAGGCTGCTGTTCTGCATTACACATACCCTAAATTTTCTGATTTGACTTCAAGACGTGATCGGTGTGGATG CAAGCCTACAAAAGAGGATGTCAAAAGATGCTTCATGTTGGAATTCGACAGAGCTGCATTCATAATTGCTTCAACAGCAACTGAGGAGGAAATGCTTCAC TGGTACCGGGAACGCATTGTGTGGACTGACAAAGCACTGAACCTGAAACTCTTGAGAAAAGGCATCCTGAACCGCATCTATGCTCCCATGGTTATTGTAC AGAGACTTAGGGAAACTGGTGTTTTTACCTCTGTGATAGCATCGGCACAGAAGGTCTTGTCATCAGTTACGAACTCTTCCACAGCTGGAGTTGCTTCCTC AAGTAAGATTGGCCATGATGGAGAATCTAAGGCAACTGCAAGAAGGGTCTTGCAGATCCCTGACAACGCCTCTTTTTCTTCAGCAATTCCACCCCTATCT CCTCCTGGCCTGGAAGGTCTTTACATGGAGATGTGA
AA sequence Show only first row Show all	>Potri.016G041900.1 pacid=42810466 polypeptide=Potri.016G041900.1.p locus=Potri.016G041900 ID=Potri.016G041900.1.v4.1 annot-version=v4.1 MAGSRPTTSISQTSSANVFTSRLLLLLTLLPLTLAAFAFLLQWRGGLTDPITRWSPDHHEFPGMESTSGSIKDTVRNSGSGCTDLLGQSHSLSFPYFRDW KFGFGSDLKPKICITTSTSAGLEQTLPWIFYHKVMGVSTFFLFVEGKAASPTVSKVLETIPGVKVIYRTRELEEQQAKSRIWNETWLASFFYKPCNYELF VKQSLNMEMAIVMAREAGMDWIIHLDTDELIHPAGAREYSLRQLLSDVPGNVDMVIFPNYESSVERDDIKEPFSEVSMFKKNYDHLPKDVYFGNYKEATR GNPNYFLTYGNGKSAARIQDHLRPNGAHRWHNYMKTPNEVKLEEAAVLHYTYPKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRAAFIIASTATEEEMLH WYRERIVWTDKALNLKLLRKGILNRIYAPMVIVQRLRETGVFTSVIASAQKVLSSVTNSSTAGVASSSKIGHDGESKATARRVLQIPDNASFSSAIPPLS PPGLEGLYMEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57200			unknown protein		Potri.016G041900 [exp]	0	1
AT1G80950			Phospholipid/glycerol acyltran...		Potri.014G042200 [exp]	4.79	0.8589
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154700 [exp]	11.74	0.8404
AT5G62500		ATEB1B	end binding protein 1B (.1)		Potri.015G062900 [exp]	15.62	0.8472	ATEB1.4
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Potri.016G125500 [exp]	26.00	0.8392
AT4G32140			EamA-like transporter family (...		Potri.018G024700 [exp]	26.07	0.8264
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Potri.005G044900 [exp]	32.86	0.8103
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.016G010200 [exp]	37.94	0.8144
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	39.11	0.8303
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	41.58	0.8302	Pt-RIC2.1
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	42.00	0.8208	ARAC2.1

Compare expression of checked genes

Potri.016G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.