Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41460 590 / 0 ARP apurinic endonuclease-redox protein (.1.2) AT3G48425 111 / 1e-26 DNAse I-like superfamily protein (.1) AT4G36050 81 / 8e-16 endonuclease/exonuclease/phosphatase family protein (.1.2) AT3G61030 72 / 4e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 0 / 1 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088900 [exp] 113 / 2e-27 AT3G48425 557 / 0.0 DNAse I-like superfamily protein (.1) Potri.007G057400 [exp] 98 / 2e-21 AT4G36050 622 / 0.0 endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.006G045601 [exp] 0 / 1 AT2G41460 0 / 1 apurinic endonuclease-redox protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000437 [exp] 609 / 0 AT2G41460 541 / 0.0 apurinic endonuclease-redox protein (.1.2) Lus10043333 [exp] 101 / 5e-23 AT3G48425 549 / 0.0 DNAse I-like superfamily protein (.1) Lus10019483 [exp] 100 / 7e-23 AT3G48425 556 / 0.0 DNAse I-like superfamily protein (.1) Lus10028455 [exp] 88 / 3e-18 AT4G36050 650 / 0.0 endonuclease/exonuclease/phosphatase family protein (.1.2) Lus10041907 [exp] 65 / 7e-11 AT4G36050 410 / 6e-135 endonuclease/exonuclease/phosphatase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.016G042000.5 pacid=42809104 polypeptide=Potri.016G042000.5.p locus=Potri.016G042000 ID=Potri.016G042000.5.v4.1 annot-version=v4.1 ATGAATCTTCAAGCGTTGCAAATAGGGGTCAAGTCTTTCATTAATCTCTCCAGTTTTGCAGCTAGGCCAAGGAGCTTGAAGATTGGACAACTGGGTTCTT TGAGATTAAGGGTGATGAGTTCTAAACGAGGTGTCTCGAGTTCAACCAAATCTGCTGCTGCTTCAATTGTTGATGACAAGAAAGATAGTAAACTTAAGGG GATGAGTGGTGATTGTAGTGAGAATGTTTTAATCGAGGAAAGTTGCTGGAAAGTCCAGTCAGTTGAATTTCAAAGTATCAAGGATGATCCAGGAAAAATA GAAGCGATGACAGTTCAGGAACTTAGAGCAACATTGAGGAAATTTGGAGTCCCTGCCAAAGGTCGTAAAGGTGACCTTGTATTTGCTTTAAAGCATTTCA TGGGTGAAAGCTCTCAGGAATTAGAAGAGCGTGTTTCCTTTAATTCTCTGGAAAATATTTCACTGCAAAAGAATACTAAACGTACATCTGATGAGAGCTG CGTTGTAAGCATTAACACTGTTTCAGAGGTTTCTGGGTTTAAACAGAGCAAGAGAAGGATGAAACAATCCCCTGTTGAGGATGAAATTGTCAAAGTTGGT ACTGAAATAGTCACTACAAAGAGGAAGCTTTCAATTAAAACCGATGATCTTGTTACTTTGCCTCAAGCTGAACCCTGGACGGTTCTTTCACATAAGAAGC CACAGAAAGGGTGGATTCCGTATAACCCCAGAACCATGAGGCCTGCACCTCTCACTGATGGAAACTCGGTGAAGCTAATGTCTTGGAATGTCAATGGGTT AAGAGCATTATTGAAGTTTGAGGGATTCTCTGCCCTTGAACTTGCCCAAAGGGAAAACTTTGATGTGTTGTGCTTGCAAGAGACCAAACTGCAGGAGAAG GATGTTGATTCCATCAAACAATGTCTGATAGATGGTTATGAGAATAGCTTCTGGACATGTAGCAATGCTAAACTTGGTTATTCTGGGACTGCAATTGTCT CTCGGATAAAGCCCCTTTCTGTCTGCTATGGTCTAGGCATCCCAGACCATGATAGTGAGGGACGTGTTGTGACAGCAGAGTTTGATTCATTTTATTTAGT AAATACTTATGTTCCTAACTCTGGAGATGGCTTGAAAAGACTGTCGTACAGGATTACACAATGGGATCCATCTCTTAGCAATTACATGAAAGAGCTTGAA AAGTCAAAGCCTGTCATTTTGACTGGTGATCTGAATTGTGCTCACCAGGAGATAGATATTTTCAATCCCGCAGGAAATAAAAGAAGCGCTGGGTTTACAG AAGAAGAAAGGCAGTCATTTGGGTCAAACTTTTTATCGAAGGGACTTGTGGATACCTTCAGAAAACAGCACCCTAATGTTGTTGGGTATACCTACTGGGG TTATCGACATGGTGGACGGAAAACTAACAAAGGATGGCGGCTTGACTACTTTCTCGTGTCGGAATCCATAGCAGACAAAGTTCATGACTCCTACATTGTC CCTGATGTTAATGGGAGTGATCACTGTCCTATTGGCCTTGTTCTCAAGGTTTAG
AA sequence Show only first row Show all	>Potri.016G042000.5 pacid=42809104 polypeptide=Potri.016G042000.5.p locus=Potri.016G042000 ID=Potri.016G042000.5.v4.1 annot-version=v4.1 MNLQALQIGVKSFINLSSFAARPRSLKIGQLGSLRLRVMSSKRGVSSSTKSAAASIVDDKKDSKLKGMSGDCSENVLIEESCWKVQSVEFQSIKDDPGKI EAMTVQELRATLRKFGVPAKGRKGDLVFALKHFMGESSQELEERVSFNSLENISLQKNTKRTSDESCVVSINTVSEVSGFKQSKRRMKQSPVEDEIVKVG TEIVTTKRKLSIKTDDLVTLPQAEPWTVLSHKKPQKGWIPYNPRTMRPAPLTDGNSVKLMSWNVNGLRALLKFEGFSALELAQRENFDVLCLQETKLQEK DVDSIKQCLIDGYENSFWTCSNAKLGYSGTAIVSRIKPLSVCYGLGIPDHDSEGRVVTAEFDSFYLVNTYVPNSGDGLKRLSYRITQWDPSLSNYMKELE KSKPVILTGDLNCAHQEIDIFNPAGNKRSAGFTEEERQSFGSNFLSKGLVDTFRKQHPNVVGYTYWGYRHGGRKTNKGWRLDYFLVSESIADKVHDSYIV PDVNGSDHCPIGLVLKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41460		ARP	apurinic endonuclease-redox pr...		Potri.016G042000 [exp]	0	1
AT5G08320			unknown protein		Potri.005G090400 [exp]	1.00	0.7352
AT1G08580			unknown protein		Potri.019G049300 [exp]	13.34	0.7032
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Potri.001G336900 [exp]	15.87	0.6675
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	29.94	0.6998
					Potri.006G127050 [exp]	47.94	0.6817
AT4G39630			unknown protein		Potri.007G085100 [exp]	61.99	0.6657
AT5G62290			nucleotide-sensitive chloride ...		Potri.015G129900 [exp]	71.28	0.6640
AT1G19990			unknown protein		Potri.005G239600 [exp]	75.04	0.6119
					Potri.017G119700 [exp]	115.60	0.6329
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Potri.009G082100 [exp]	117.96	0.6317

Compare expression of checked genes

Potri.016G042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.