Plant FIBer expression Database

Pt-GPT.3 (Potri.016G042100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-GPT.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41490 564 / 0 GPT UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1)
AT3G57220 563 / 0 Glycosyl transferase family 4 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G045700
[exp]
724 / 0 AT3G57220 566 / 0.0 Glycosyl transferase family 4 protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016077
[exp]
599 / 0 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1)
Lus10012300
[exp]
489 / 2e-172 AT2G41490 542 / 0.0 UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00953 Glycos_transf_4 Glycosyl transferase family 4
Representative CDS sequence
>Potri.016G042100.6 pacid=42810370 polypeptide=Potri.016G042100.6.p locus=Potri.016G042100 ID=Potri.016G042100.6.v4.1 annot-version=v4.1
ATGGCAAGAAAAAGAGCTTCAAAGCCAACAACGACAACAGAAGACACAATAACAACAACAAAAGAAGCAATTCTCACAAACAACAAAGAAACGAAACGTC
CTCAAGAAACAAACAATGACCAACCAATTGCGCCACCAAAAAAAGGATTCATTTTCAAGCTCTCTCTTTTACTAATAGCCCCGTATTTCTACTTGCTCTT
TTTTCACTACCAGATCCAACATGACCTCATAAAACCTATTCTTATAAATGCTGGTCTTAGTCTTGTTGGGTTTTTTCTTACTGTTAAGATGATTCCTGTA
GCTTCTAAATATGTTTTGAGAAGGAATTTGTTTGGTTATGATATCAACAAGAAGGGCACTCCTCAAGGCACTGTTAAAGTGCCTGAGTCCTTGGGTATTG
TTGTTGCGGTAGTCTTCATGGTTTTGACAATAGTGTTTCAGTTTTTTACCTTCGCGCCAGATTCCATTTGGCTTGTTGAGTACAATGCAGCATTAGCATC
CATTTGCTTCATGACTCTACTCGGGTTCATAGATGATGTCCTTGATGTTCCATGGAGAGTGAAATTAGTGCTTCCATCAATTGCTGCCCTTCCTTTGTTG
ATGGCATATGCTGGACATACAACTATCATTATACCAAAGCCTCTTATTCCATATGTTGGGCTCAAGTTGTTGGACCTGGGATTTATATATAAGATTTACA
TGTGGTTTTTGGCAATTTTCTGCACAAATTGCATTAACATTCATGCTGGTATAAATGGCCTTGAAGTTGGTCAAACCGTTGTGATCGCATCTGCGATTTT
GATACATAATGTCATGCAAATTGGAGCATCTGCGGATCCTGAGTATCAACAGGCCCATGCATTCTCTGTGTATCTTGTCCAACCCTTACTGGCAACCTCC
ATGGCCTTGCTTTCTTACAATTGGTATCCTTCTTCAGTATTTGTTGGAGATACATATACATACTTTGCAGGGATGACAATGGCTGTTGTTGGAATTTTAG
GCCATTTTAGTGAAACACTTCTGATTTTCTTTTTGGCACAAGTATTAAACTTCCTCTTGTCAGTCCCTCAGCTTTTTGGCTTCAGGCATTGTCCACGACA
TCGTCTGCCTAGGTTTGATCCTCAGACAGGACTTCTTACAGGAACAGATGACGGTACACTTGTTAATTTTTACTTGAGAATGTTCGGCAGGAAGTCAGAA
AATTCACTTTGCGTGCATCTTCTTCTTGTTCAGGTGATTTATTTCTGTGTTAAATTTTCTCTCCTTTTACTCATGCACTGCGGGGAAGGGGCTTTTTCCC
TCGTTGATGCTGGGTTTGGACTTCACTGTCCCATGCTTCTCACAATTTTGGGACCAGTGAGCACCACTGGCCGTAAGCAGGAGTTCCAAGCCACTTGA
AA sequence
>Potri.016G042100.6 pacid=42810370 polypeptide=Potri.016G042100.6.p locus=Potri.016G042100 ID=Potri.016G042100.6.v4.1 annot-version=v4.1
MARKRASKPTTTTEDTITTTKEAILTNNKETKRPQETNNDQPIAPPKKGFIFKLSLLLIAPYFYLLFFHYQIQHDLIKPILINAGLSLVGFFLTVKMIPV
ASKYVLRRNLFGYDINKKGTPQGTVKVPESLGIVVAVVFMVLTIVFQFFTFAPDSIWLVEYNAALASICFMTLLGFIDDVLDVPWRVKLVLPSIAALPLL
MAYAGHTTIIIPKPLIPYVGLKLLDLGFIYKIYMWFLAIFCTNCINIHAGINGLEVGQTVVIASAILIHNVMQIGASADPEYQQAHAFSVYLVQPLLATS
MALLSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLAQVLNFLLSVPQLFGFRHCPRHRLPRFDPQTGLLTGTDDGTLVNFYLRMFGRKSE
NSLCVHLLLVQVIYFCVKFSLLLLMHCGEGAFSLVDAGFGLHCPMLLTILGPVSTTGRKQEFQAT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41490 GPT UDP-glcnac-adolichol phosphate... Potri.016G042100
[exp]
0 1 Pt-GPT.3
AT5G42020 BIP2, BIP luminal binding protein, Heat ... Potri.001G087500
[exp]
3.31 0.8449 Pt-BIP.2
AT1G79920 AtHsp70-15 heat shock protein 70-15, Heat... Potri.001G180100
[exp]
4.00 0.8367 Pt-HSP91.2
AT4G24330 Protein of unknown function (D... Potri.004G223000
[exp]
4.89 0.8290
AT5G61790 CNX1, ATCNX1 calnexin 1 (.1) Potri.012G111100
[exp]
6.92 0.7994 CNX1.2
AT1G79940 ATERDJ2A DnaJ / Sec63 Brl domains-conta... Potri.004G072200
[exp]
7.48 0.7201
AT5G61790 CNX1, ATCNX1 calnexin 1 (.1) Potri.015G109200
[exp]
8.06 0.7852 CNX1.1
AT4G16660 heat shock protein 70 (Hsp 70)... Potri.016G019800
[exp]
8.48 0.7839
AT4G24190 AtHsp90-7, HSP9... SHEPHERD, HEAT SHOCK PROTEIN 9... Potri.005G241100
[exp]
10.90 0.7809
AT5G42020 BIP2, BIP luminal binding protein, Heat ... Potri.003G143600
[exp]
11.22 0.7670 BIP.1
AT5G11560 catalytics (.1) Potri.006G240300
[exp]
12.04 0.6912

Potri.016G042100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.