Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41500 326 / 1e-104 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G05720 167 / 1e-47 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 64 / 9e-11 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 63 / 5e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 62 / 7e-10 TAF5 TBP-associated factor 5 (.1) AT4G32551 62 / 1e-09 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT5G23430 61 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 61 / 2e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G26060 59 / 4e-09 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 58 / 9e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G045800 [exp] 496 / 1e-170 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.008G002300 [exp] 66 / 7e-11 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 64 / 8e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 62 / 5e-10 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G255400 [exp] 62 / 1e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G248100 [exp] 62 / 1e-09 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.018G020200 [exp] 61 / 2e-09 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.018G033300 [exp] 59 / 1e-08 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.007G050100 [exp] 58 / 1e-08 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004167 [exp] 409 / 1e-136 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 407 / 7e-136 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 69 / 1e-12 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 68 / 3e-12 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 66 / 3e-11 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 65 / 3e-11 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 64 / 3e-10 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 63 / 3e-10 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024447 [exp] 61 / 2e-09 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10002860 [exp] 59 / 4e-09 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08799 [poplar] [flax] PRP4 pre-mRNA processing factor 4 (PRP4) like
Representative CDS sequence Show only first row Show all	>Potri.016G042250.1 pacid=42808951 polypeptide=Potri.016G042250.1.p locus=Potri.016G042250 ID=Potri.016G042250.1.v4.1 annot-version=v4.1 ATGGCAGCTGAACATGAAAACCCCAATTCATCGAATTTACCAGCAGAATCTTCTGCTTTTGTCACTGATGATGAACTGATGATTGATAATACTAGTCCTA TTCCACTAGCAATCCCACCATCAATACCGGCTGTGCCTCCTAATGCTCTGATACTCACAGTTCCTCCTCGCCCATTAGTGCCTTTCCCCATCCGACCACC TGGGGTGCAAAGTGGTGAGATAAGGACTAGTGACTCGGATTCTGACCAAAATCAATTACGTCCCACTGGAACTATCCTGGGGTCAACTGGAGGTTATGAA GTTTCAGAAGCTATTCAGAGAACACAAGAAAAAGCAATGCAGGAGCTTATGATGAAGTGGAGTGCTGCTGCTCTGGCAGTGCCTACTAATGATATGGCGG TTAGGACTCATCGTCGCCGGCTTGGTGAGCCTGTAACTCGTTTTGGAGAAAGGGAGACGGAGAGACGGGACAGATTGAGGATGCTTATGGCAAGGTTGGA TTCTAAAGGGCAGTTGGAGAAGTTGATGAAAGCTCATGTTGAAGAGGAGGCTGCATCTACCGCATTAGCAAAAGATGCCGAGGAAGGAATGGTTCAGTAT CCATTCTATACTGAAGGGTCAAAAGAGCTATTGGATGCTAGAATTGATGACCCAGATGAGGGTGGAGATGAAGATGCAGACATTGATTTGGCTCTGAAGC AGGCAGAGAGTTTGAGTCTTAATAGCAGCGAACTTGGAGATGACCAGCCACTCTCTGGTTGTACCTTTTCTCGTGATGGAGAAATGCTTGCTACCTTTGG TTTTTTCTTCTTCCACCACATGACATATCACATCTGGCAGCATGGTCATTCTTTCTTACTTGGACAATACCCAATAACTTATAAAGTGAAGTACGATTCT TTAAGTGGAGTTGCTAAAATATGGAGGGTGCCTCAAGTAACAAAGTTTTCTACCTTAAAGGGGGACACAGAATGTGCAACTGATGTCGCCTTCTCTCTTG TGCACAATCACTTGGCAACTGCATCTGCTGATCAAACTGCAAGGTTGTGGAACACTGATGGTTCTCTCCTGAAGAAGTTTGAAGGTCATCTAGATCGTCT TGCTCAAATTGGTTTCCATCCATCAGGGAAGTACCTGGGCACCGCAAGCTTTGATAAGACATGGAGACTGAGATATAGATTCTGGTACGGAGCTGCTTCT TCAAGAAGATCACAAAGTACAATGGCATTGGAAGGCCATGTCAAGCCGGTTCTTGGAATCAGCTTTTCACCCTTTGGCTATCATGCAGCAACTGGCAGTG AAGATAATATTTGCTGGATATCATACCAGCCCACTCAAATCCTGTATCCCAAGTTTGAGCCCCAAGAAGGCTGTTATCTGGTCACATCATCGTATGACAT GACTGCTAAGGTTTGGTCCGGCAGATATTTTAAACCTGTCAAGACATTATCAGCTCATGAAGCCAAAGTTACATCTCTGAATATTAATGCAGGCAACTTT CCGAACTTAGATAAGGCATATGGATTAACTATGTTCCCTTGTCATTCTTGTTCTGCAATTTACTCGATTATAATAAGGTGTCATTTGTGTCTGTGTGCGA AAGGTTGGCTTGCCTTGTCTGGTGATCATTTGAATTATGGACATCATATTGCAACTATCTCACATGATCGAACCATCAAGCTGTATACCAGCAGAAGCAA TGACAAGCATGCTATGGAGGTTGAATGA
AA sequence Show only first row Show all	>Potri.016G042250.1 pacid=42808951 polypeptide=Potri.016G042250.1.p locus=Potri.016G042250 ID=Potri.016G042250.1.v4.1 annot-version=v4.1 MAAEHENPNSSNLPAESSAFVTDDELMIDNTSPIPLAIPPSIPAVPPNALILTVPPRPLVPFPIRPPGVQSGEIRTSDSDSDQNQLRPTGTILGSTGGYE VSEAIQRTQEKAMQELMMKWSAAALAVPTNDMAVRTHRRRLGEPVTRFGERETERRDRLRMLMARLDSKGQLEKLMKAHVEEEAASTALAKDAEEGMVQY PFYTEGSKELLDARIDDPDEGGDEDADIDLALKQAESLSLNSSELGDDQPLSGCTFSRDGEMLATFGFFFFHHMTYHIWQHGHSFLLGQYPITYKVKYDS LSGVAKIWRVPQVTKFSTLKGDTECATDVAFSLVHNHLATASADQTARLWNTDGSLLKKFEGHLDRLAQIGFHPSGKYLGTASFDKTWRLRYRFWYGAAS SRRSQSTMALEGHVKPVLGISFSPFGYHAATGSEDNICWISYQPTQILYPKFEPQEGCYLVTSSYDMTAKVWSGRYFKPVKTLSAHEAKVTSLNINAGNF PNLDKAYGLTMFPCHSCSAIYSIIIRCHLCLCAKGWLALSGDHLNYGHHIATISHDRTIKLYTSRSNDKHAMEVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.016G042250 [exp]	0	1
AT1G05700			Leucine-rich repeat transmembr...		Potri.013G030100 [exp]	14.24	0.7252
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.015G093300 [exp]	15.68	0.6691
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	24.61	0.7661
AT1G43760			DNAse I-like superfamily prote...		Potri.014G188801 [exp]	29.52	0.7602
AT4G17565			F-box family protein with a do...		Potri.004G134900 [exp]	40.29	0.7540
					Potri.008G206866 [exp]	52.72	0.7432
AT5G05800			unknown protein		Potri.014G091925 [exp]	53.38	0.7320
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	59.09	0.7426
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Potri.009G104200 [exp]	69.33	0.7287
					Potri.011G006000 [exp]	81.42	0.7244

Compare expression of checked genes

Potri.016G042250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.