Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03990 137 / 1e-38 unknown protein AT3G51940 106 / 5e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G045900 [exp] 381 / 2e-134 AT5G03990 137 / 1e-38 unknown protein Potri.001G021100 [exp] 131 / 3e-35 AT3G51940 143 / 2e-38 unknown protein Potri.006G262800 [exp] 75 / 6e-16 AT5G03990 87 / 1e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016362 [exp] 112 / 3e-28 AT5G03990 125 / 5e-33 unknown protein Lus10039572 [exp] 108 / 2e-27 AT3G51940 123 / 9e-32 unknown protein Lus10019039 [exp] 45 / 5e-06 AT5G03990 62 / 5e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G042400.2 pacid=42809046 polypeptide=Potri.016G042400.2.p locus=Potri.016G042400 ID=Potri.016G042400.2.v4.1 annot-version=v4.1 ATGAATAACAGGAGGAGACAGAGAGGTGAAATTTATCAACATCAAGAAGTTCAAGGGACAACAAGATCACGTTGTAGAAAACCTCCTCCTCATCATGGTA GTTGGCAGCCAACTGTTCCATCATGGGAAAAGAGATTCTGCTATTCAGTTGGTTCAATTCCATGGAGGAAGCTCCTGGAAACCCAAAGATTTATGTATCT CTATGAGAATGTAGTTCAGTGGAATGACTCTGCTGGTGAAGAGGCATTTCACAATGCTAAAAACCGATTTTGGGCAGAGATTAATGGCCTACCTTGCAAC ATATCACTGCCTGATCCTGATATTTATATTGATCAAATTGATTGGAACTCCAATGTTGATCCTGAATTGCTTTTAGACTTGGAGCGGGAACCGAAAGATG TTGATGAGACTAGCAAAGGGGAGGAGGTTGTGATTATTGGCAATCCTCTACTCTTGAACCAGCCATTTTCATGTGCTGGATGGGGGGAACTTGAGGAGGA ATTTCAAAAGGTTCCTGATTTGGCATTGGATCCTGGACTTGGGGATTTCAACCATAAAGTCACCAAAGATGATTTTCCCTGGGAAAAGAGTGTTACTCTT CCTAATGAAGCCATGAACGAAGATGGATGGGGAAATTGTTGGAATGATTCATGCGGTTGGGGCAACAGTGAGTGGGGTGCTAATAATGACCGGAAGAATG TTAGTGATGGCACTGGTGGTGACTGGGGAACATGGGATGGGCAAGGCCAAAAGAGGGAAGGTGCTGTTCGTCACATGTCAAGGTATAAAACCTCCAGGTT TCACGGTGATGAATATCCAGTAGACCGTGGATTGTGGAGGCATGGAAGAGGGAGGAGGAGGGTAAATTTTGTTTATTGA
AA sequence Show only first row Show all	>Potri.016G042400.2 pacid=42809046 polypeptide=Potri.016G042400.2.p locus=Potri.016G042400 ID=Potri.016G042400.2.v4.1 annot-version=v4.1 MNNRRRQRGEIYQHQEVQGTTRSRCRKPPPHHGSWQPTVPSWEKRFCYSVGSIPWRKLLETQRFMYLYENVVQWNDSAGEEAFHNAKNRFWAEINGLPCN ISLPDPDIYIDQIDWNSNVDPELLLDLEREPKDVDETSKGEEVVIIGNPLLLNQPFSCAGWGELEEEFQKVPDLALDPGLGDFNHKVTKDDFPWEKSVTL PNEAMNEDGWGNCWNDSCGWGNSEWGANNDRKNVSDGTGGDWGTWDGQGQKREGAVRHMSRYKTSRFHGDEYPVDRGLWRHGRGRRRVNFVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03990			unknown protein		Potri.016G042400 [exp]	0	1
AT1G61340			F-box family protein (.1.2)		Potri.004G034400 [exp]	4.00	0.7835
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	4.24	0.7904
AT5G15570			Bromodomain transcription fact...		Potri.017G094900 [exp]	5.47	0.7653
AT4G34880			Amidase family protein (.1)		Potri.009G130700 [exp]	6.00	0.7610
AT2G01100			unknown protein		Potri.008G126800 [exp]	14.69	0.7297
AT2G26230			uricase / urate oxidase / nodu...		Potri.010G242600 [exp]	17.23	0.7347	Pt-ASUR5.1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Potri.014G134800 [exp]	18.16	0.7428	TIR1.2
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Potri.010G041401 [exp]	21.02	0.7278
AT5G10695			unknown protein		Potri.018G007300 [exp]	22.22	0.7212
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	25.49	0.7549

Compare expression of checked genes

Potri.016G042400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.