Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10150 521 / 0 ATPAP16, PAP16 purple acid phosphatase 16 (.1) AT5G57140 117 / 4e-29 ATPAP28, PAP28 purple acid phosphatase 28 (.1) AT5G63140 115 / 2e-28 ATPAP29, PAP29 purple acid phosphatase 29 (.1) AT2G46880 90 / 6e-20 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G183000 [exp] 113 / 1e-27 AT5G63140 521 / 0.0 purple acid phosphatase 29 (.1) Potri.006G074300 [exp] 113 / 1e-27 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1) Potri.002G183200 [exp] 110 / 1e-26 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1) Potri.014G109100 [exp] 108 / 7e-26 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1) Potri.006G074500 [exp] 98 / 2e-22 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018030 [exp] 568 / 0 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1) Lus10031039 [exp] 469 / 1e-165 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1) Lus10042026 [exp] 167 / 8e-50 AT3G10150 150 / 1e-43 purple acid phosphatase 16 (.1) Lus10022947 [exp] 108 / 5e-26 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1) Lus10027596 [exp] 106 / 3e-25 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1) Lus10009863 [exp] 99 / 1e-22 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1) Lus10010289 [exp] 98 / 3e-22 AT5G63140 491 / 2e-174 purple acid phosphatase 29 (.1) Lus10005170 [exp] 67 / 2e-13 AT3G10150 59 / 3e-11 purple acid phosphatase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.016G042500.1 pacid=42809011 polypeptide=Potri.016G042500.1.p locus=Potri.016G042500 ID=Potri.016G042500.1.v4.1 annot-version=v4.1 ATGAAACGACATGCAGCTCCTTTAACCGTCTTGTCGTTCTCGTGCCTCCTTATCCTCTTACTACCAATCCTGACCGTCGGATTTGCTGATCGTCTACAAG CATACGACCCTCCTCTCAGTCTGCTCAAAACGGCACTGCAGCCAGAACAAAAACCAGAGGAGATAAAGAGCCTTCGGGTACGGGAAGGGGCACCGTTTAA GATCGCGCTCTTTGCTGACCTGCATTTTGGAGAGAACGCGTGGACTGATTGGGGCCCACAACAGGACGTTAACTCCATCAAGGTCATGTCCTCTGTTCTC GACGATGAATCACCAGATTTTGTGATATATCTCGGGGATGTAATAACGGCAAACAACATACCGATTGCAAACGCAAGCTTGTATTGGGATAAAGCAATAT CTCCAACGAGGGCAAGGGGCATACCATGGGCTAGTATCTTTGGTAATCACGATGATGCACCATTTGAGTGGCCAATGGAGTGGTTTTCTTCTCCTGGAAT TCCTCCTATTAATTGCCCTGCACCTAACGCATCATCATGCTCAGGGGAAAGCTACTGTAGCTTTAGAGGCACACAACGGATAGAGCTAATGAAAAAGGAG ATTGAGCATAATCTCCTAACGTTGTCTAAAAATGGCCCGAAAGATTTGTGGCCAAGTATATCCAACTATGTCCTCCAGCTCTCATCATCAGATGATCCAG AGTCACCAGTTCTGTTCATGTATTTCCTAGACTCTGGTGGCGGATCCTATCCTGAAGTTATTTCAAATGCTCAAGCAGAATGGTTCCAGCATGTATCTGA GGAGATCAACCCTGATTCAAGGGTTCCTGAGGTTATCTTTTGGCATATACCAAGCAAAGCTTACAAGAATGTGGCCCCCAGGTTAAGGATCCACAAGCCT TGTGTTGGTTCCATGAACAAAGAAAAAGTTGCTGCTCAAGAAGCTGAATTGGGTATCATGGACATGCTAGTTAAACGGTCTTCTGTCAAGGCAGTATTTG CAGGACACAACCATGGATTGGACTGGTGCTGCCCCTACAAGAAACTTTGGCTATGTTATGCTAGGCATACTGGTTATGGTGGCTATGGAAATTGGCCTAG AGGAGCTAGAATTCTGGAGATTAATGACCAGCCCTTCTACATCAAGTCATGGATAAGGATGGAAGATGGAAATGAACACAGCCAAATTATCTTGAGTCCT TGA
AA sequence Show only first row Show all	>Potri.016G042500.1 pacid=42809011 polypeptide=Potri.016G042500.1.p locus=Potri.016G042500 ID=Potri.016G042500.1.v4.1 annot-version=v4.1 MKRHAAPLTVLSFSCLLILLLPILTVGFADRLQAYDPPLSLLKTALQPEQKPEEIKSLRVREGAPFKIALFADLHFGENAWTDWGPQQDVNSIKVMSSVL DDESPDFVIYLGDVITANNIPIANASLYWDKAISPTRARGIPWASIFGNHDDAPFEWPMEWFSSPGIPPINCPAPNASSCSGESYCSFRGTQRIELMKKE IEHNLLTLSKNGPKDLWPSISNYVLQLSSSDDPESPVLFMYFLDSGGGSYPEVISNAQAEWFQHVSEEINPDSRVPEVIFWHIPSKAYKNVAPRLRIHKP CVGSMNKEKVAAQEAELGIMDMLVKRSSVKAVFAGHNHGLDWCCPYKKLWLCYARHTGYGGYGNWPRGARILEINDQPFYIKSWIRMEDGNEHSQIILSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Potri.016G042500 [exp]	0	1
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.015G038800 [exp]	9.53	0.8869
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.001G108700 [exp]	18.49	0.8689
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	22.44	0.8419
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	25.49	0.8556
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Potri.007G017900 [exp]	31.22	0.8538
AT2G40435			unknown protein		Potri.006G106900 [exp]	37.41	0.8306
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.010G254200 [exp]	42.16	0.8521
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.002G191400 [exp]	48.92	0.8558	ARF1.2
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	55.30	0.8452
AT3G60910			S-adenosyl-L-methionine-depend...		Potri.001G261000 [exp]	64.00	0.8070

Compare expression of checked genes

Potri.016G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.