Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03960 180 / 2e-52 IQD12 IQ-domain 12 (.1) AT5G13460 89 / 5e-19 IQD11 IQ-domain 11 (.1) AT5G03040 56 / 3e-08 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 52 / 6e-07 IQD3 IQ-domain 3 (.1) AT3G09710 52 / 7e-07 IQD1 IQ-domain 1 (.1.2) AT3G59690 49 / 4e-06 IQD13 IQ-domain 13 (.1) AT1G76705 47 / 5e-06 calmodulin binding (.1) AT2G43680 47 / 2e-05 IQD14 IQ-domain 14 (.1.2.3) AT4G14750 45 / 6e-05 IQD19 IQ-domain 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046000 [exp] 534 / 0 AT5G03960 197 / 1e-58 IQ-domain 12 (.1) Potri.001G021000 [exp] 166 / 1e-46 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.010G218100 [exp] 56 / 4e-08 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.001G448100 [exp] 53 / 3e-07 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.019G095700 [exp] 51 / 1e-06 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.006G131100 [exp] 47 / 3e-05 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.013G127200 [exp] 46 / 4e-05 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.011G153400 [exp] 46 / 5e-05 AT4G00820 331 / 3e-107 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042027 [exp] 111 / 1e-26 AT5G03960 169 / 5e-48 IQ-domain 12 (.1) Lus10018031 [exp] 95 / 2e-21 AT5G03960 119 / 3e-30 IQ-domain 12 (.1) Lus10018029 [exp] 84 / 2e-17 AT5G03960 114 / 2e-28 IQ-domain 12 (.1) Lus10005315 [exp] 71 / 7e-13 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10039573 [exp] 64 / 1e-10 AT5G13460 243 / 9e-76 IQ-domain 11 (.1) Lus10025593 [exp] 55 / 8e-08 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10042025 [exp] 54 / 9e-08 AT5G03960 80 / 2e-16 IQ-domain 12 (.1) Lus10019916 [exp] 52 / 6e-07 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 49 / 8e-06 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 47 / 1e-05 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.016G042700.2 pacid=42810468 polypeptide=Potri.016G042700.2.p locus=Potri.016G042700 ID=Potri.016G042700.2.v4.1 annot-version=v4.1 ATGGCAAGGAAGAAGAGGTGGTTTGGTTGGGTGAGGAGGCTATTTGTCTCTGAGCAAAAACCAAAAGCAGAAAAGAAATCAAAGAGGTGGAAATGGGTTC TTGGAGGGCTCAAGGTCAAACAATGCCTTGCACTTCCAGCACCACAGAGAAGAGAAGTGAGAACAGTCAGTGAAGCATCAGAAACACAAAAAAAGTATGC TTTGACTGTTGCCCTTGCAACAGCAGCTGCAGCTGATGCTGCTGTTGCCGCTGCTCATGCTGCAGCTGAGGTTGTCCGGCTCACAGGTGCCTCACATCCT TCCCATCATTTCACCAAAGGAGTGGAAACTTTGGCTGCCATTAAAATACAAAGCGCTTTCCGTGCATATCTTGCAAGAAAAGCCTTACGAGCACTGAAGG GATTGGTGAAGCTTCAAGCCATTGTTCGTGGACAAGTTGTTAGACGCCAAGCACTCATCAAATTGAAACATTTTCCATCAAATGCAAAAATGATGTCAGA AGTCCAGGCAAAAGGCATTACTGCAGATGGATTTTGTAAAAGCGGTGAAAATAAACATGTTGTCAAGTCAAGGAAAGAGGTGCAAGAGAAGGAAACTAAG GTACGAGAGATGATCTTGCAGCTCCTCAAGTCAAAGGAGGTGGTTGAGAAAGAACATAAGGGGAAGAACGATAAAAGAGAAACTCAAACAGATCATATGC TTGTATTGAACAGCCAAAAGAGTTGGAATTTTAGCTTGCGTTCGAAGGAAGACGTGGAAGCTCTGTTGTTAAAAAAGCAAGAGGCTAACATCAAAAGAGA GCGAATGATGAAATACTCATTTTCCAACCGGGAGAGAGGAAATGGTCTATTCGAAGAATCGCAACTCGCCAAGGAAAGTGGTAGACAGAGTCACCAGATA AAACAGTGGCCGAACAAAGAGGCCTATAATAGAGAAAGGATGGAGAATTTGAAATCAGCTCCCATCTCTAATTTGTTTACTGGTGATATATTCAGCCCAG CACAAGTTAAGACCAGAAGTACCCGAAAACAAGATTTTATAGAAGGGTTGAATACACCTGTGTCCTTCCCCAGAAGATCATTTGGCAGCATGCGACCAAG TTTGGCTGGAGAAGGTAATTCCTTGCCAAATTCCCCAGTTTTTCCTACTTACATGGCTGCAACGCAATCTGCAAAGTTAAAGGCAAGGTCGATGAGCACA CCAAAGCAACGAGAAGGATTTCAAGATTCTTGCTTTGAGTAG
AA sequence Show only first row Show all	>Potri.016G042700.2 pacid=42810468 polypeptide=Potri.016G042700.2.p locus=Potri.016G042700 ID=Potri.016G042700.2.v4.1 annot-version=v4.1 MARKKRWFGWVRRLFVSEQKPKAEKKSKRWKWVLGGLKVKQCLALPAPQRREVRTVSEASETQKKYALTVALATAAAADAAVAAAHAAAEVVRLTGASHP SHHFTKGVETLAAIKIQSAFRAYLARKALRALKGLVKLQAIVRGQVVRRQALIKLKHFPSNAKMMSEVQAKGITADGFCKSGENKHVVKSRKEVQEKETK VREMILQLLKSKEVVEKEHKGKNDKRETQTDHMLVLNSQKSWNFSLRSKEDVEALLLKKQEANIKRERMMKYSFSNRERGNGLFEESQLAKESGRQSHQI KQWPNKEAYNRERMENLKSAPISNLFTGDIFSPAQVKTRSTRKQDFIEGLNTPVSFPRRSFGSMRPSLAGEGNSLPNSPVFPTYMAATQSAKLKARSMST PKQREGFQDSCFE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03960		IQD12	IQ-domain 12 (.1)		Potri.016G042700 [exp]	0	1
					Potri.001G029000 [exp]	2.23	0.8846
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011750 [exp]	4.47	0.7936
AT5G14510			ARM repeat superfamily protein...		Potri.001G344200 [exp]	7.07	0.8670
AT1G69680			Mog1/PsbP/DUF1795-like photosy...		Potri.019G023800 [exp]	9.21	0.8362
					Potri.009G072966 [exp]	11.74	0.8240
AT2G19080			metaxin-related (.1)		Potri.018G147625 [exp]	11.83	0.8157
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Potri.002G023700 [exp]	18.00	0.7944
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.018G023600 [exp]	19.79	0.7755
					Potri.008G108801 [exp]	20.04	0.7186
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074600 [exp]	22.31	0.7427

Compare expression of checked genes

Potri.016G042700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.