Plant FIBer expression Database

Potri.016G043300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41550 51 / 2e-06 Rho termination factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G046700
[exp]
531 / 2e-179 AT2G41550 / Rho termination factor (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G043300.4 pacid=42809711 polypeptide=Potri.016G043300.4.p locus=Potri.016G043300 ID=Potri.016G043300.4.v4.1 annot-version=v4.1
ATGGATTGGGATCTTTGGGGTCCACCAAATGATATAGTGGCAGAAGAAAGCGGTTTTGATAATTCCCAGTGTGACTTTTACTTTGGTTATGTGTTTGATG
TGATAGAAGAAGAAGCTCTGAACGAGAAATCTTGTGTGCAAGTGCTGAGGATTTTGATAAAGAAGGCAGATACAGAAATTCTTGAATTTGAACAAGATTT
GTTATCCTTGCAGACTGAACTAGCTTGGGTTGAAAATGAAGATTGGCCTGATATATGTTGTAATGCTTTGAGAGAAAAGATTGATTTCCTTGATATTTCA
ATAAAAAATCTGACGAGTAAAGACAAGAATGAAATCGAGGTTCGTTTACTGATGTATACACAACCTGTTGAGACACTGGACGAAATTTTGAAGGTGCTTT
TCAGAAATTACATCTGCGAAAAGGATAAGCAGCATAAGAATGCCATTGTCTTGGGTTCAAGCTCAGATGCTCCACAACATGCAACCAATGGTTTGGACAA
GGAGAAAAGGTTGAGCAACTGCAATTTGGAAACAGTTACGAGTGAGAAAACCAAGGACTGCAGCTCTATTCCAACAGAACATTGTGCAATTTTGAATCCA
TCTTTGAATCTTCAAGGGAAGAAAACTGGCAATTCGATGGTCGTGAAGCTTGCAAGTTCTAATATCAAAGTCTCCGCCCCACAGTCTTCAGAAGTGGCAC
CTGATTACTCTGATAAGAAGAAATCATTGAGCTTGTGTATTCCAAGAAGTACTGGGAAAGGGGATGACAGAGAGCATGGCTCAACTCCAGAAGATGAGAA
ACTGATCCAAAGTTTGTCTTCAAAATCAGCATATAAGGGAAGACATAGTCTAAAACCGGTCAACGTTGAGCCTACAGAAAATAGTGCAAGTAATTCCACT
ATATATGCTTCGGAAAATGCAGTCACCCCCTCCAATAAGGAAAAACTGGATGATTCAGATTCAATTGCAACTGAAGAAGTTGAAGAACACAGTTCTATAT
CTACAGTTGATGTTGTAACCTCAGTTACTTCTTCAAAGCCTGTGGTGAAGAAAACAGATCTCAGGAAAATAGTCAAGGTCAGCTTATTTACATGCAACTA
TAATCAGCCTTCAAATACAGCTGCTAAAGATTTTGGCCCAAGTGGTAATAGGAATGCAGCACATCGCTCCAGTGAGAATAAAATGTTGGTGACGCCTGAT
CTGAAAGTAATTGGAAATGAGGAAGCCACAGGACTCCAATCTAGAGCTAGAGGCAAAAGTAAAACTTCGAGTTCATCTTCAAATCTGGAGGGCAGAAGAA
ATCGTCCAGGAACAGATGAGCCTGCAGGTGCTATTCTAAAAATTGTTCGTGCAGAAGCTCTAAGAAGTCCAGCTGGCCTCCATGGAACTAAAGACAATTC
TGATTGTGCGCTAGGTACTTTTAAACAGGCTAAGGGCAGCAACTCTGGTACAGAGCAAAAATTGTCTGAGTTTGCTCCAAAATCAGCACTGAAACGAACT
GTGAAAGAATTAAAGATTGCTGTAGCTCATGATGTAGTTTCATTGAAGTCACCACGGAAGACAAATGGCAAAAAGAAAACTCCTTTAATTGTGAAGTTTA
GAGAAACTGATCTGACTGACACTGAAAATTGTGCCTTGACTTCACTTTTAGAGATACAAGATCACGGAGGGAGAAATACAGCCAAGCTGCAGCCTGAGGA
AGAAAAACCTATGCTGGTTGAAGTTCAAATGACAGAAATTTCTGCTGATGAGAAAAGGTCGAGCTTGAATTTGTCCTTGATTCGACAAAAAGAGAAGGGA
AAGAGGCATATCAAGACAAATCCACCAATTCTCCATGAGATTGGTTTCTCTGAACTGATACTTAAAAGTTCATCTTCTATTTCTGAAAGCAATAAGAAAC
GAAAATCTGGAGCCGGCCCACAAAATGCCAGTTTAAACCAGACTTTGAGTAGAAAGATCACAAAAAAATCAGCAAGACCTGACAAGGGTGAAGCTAGAGA
ACACGGCGCTGCAACTTATAATGCCCCGAATTCAGTATCAGAGCCTCAGAAGAAAAAAAAGGTATGTGTAAATTTTCCACTCCCTCTGGGGACTGAAGAT
CCAACTGTTCAAATGGATTTATCTAGTTCACTTGGGGACACAATTGACGGTGCAAGCAAGGATGACCTTTCAGTTGAAGAGTCTTGCTCAATCTGTGATT
CCAGTTCGGAGGTTGTGGCATCATTTTCTTCTGCTATGAGCACCTTGAGGAACTTGCCTTTAGCTGAACTGAGGACCATTGCAGGCCGACTTAAACTAGC
CAAATTCAGTAAGCTTCGGAAAGCGGTGCTACTTGAACAAATAACAGAGCGTCTTGTTAATTGA
AA sequence
>Potri.016G043300.4 pacid=42809711 polypeptide=Potri.016G043300.4.p locus=Potri.016G043300 ID=Potri.016G043300.4.v4.1 annot-version=v4.1
MDWDLWGPPNDIVAEESGFDNSQCDFYFGYVFDVIEEEALNEKSCVQVLRILIKKADTEILEFEQDLLSLQTELAWVENEDWPDICCNALREKIDFLDIS
IKNLTSKDKNEIEVRLLMYTQPVETLDEILKVLFRNYICEKDKQHKNAIVLGSSSDAPQHATNGLDKEKRLSNCNLETVTSEKTKDCSSIPTEHCAILNP
SLNLQGKKTGNSMVVKLASSNIKVSAPQSSEVAPDYSDKKKSLSLCIPRSTGKGDDREHGSTPEDEKLIQSLSSKSAYKGRHSLKPVNVEPTENSASNST
IYASENAVTPSNKEKLDDSDSIATEEVEEHSSISTVDVVTSVTSSKPVVKKTDLRKIVKVSLFTCNYNQPSNTAAKDFGPSGNRNAAHRSSENKMLVTPD
LKVIGNEEATGLQSRARGKSKTSSSSSNLEGRRNRPGTDEPAGAILKIVRAEALRSPAGLHGTKDNSDCALGTFKQAKGSNSGTEQKLSEFAPKSALKRT
VKELKIAVAHDVVSLKSPRKTNGKKKTPLIVKFRETDLTDTENCALTSLLEIQDHGGRNTAKLQPEEEKPMLVEVQMTEISADEKRSSLNLSLIRQKEKG
KRHIKTNPPILHEIGFSELILKSSSSISESNKKRKSGAGPQNASLNQTLSRKITKKSARPDKGEAREHGAATYNAPNSVSEPQKKKKVCVNFPLPLGTED
PTVQMDLSSSLGDTIDGASKDDLSVEESCSICDSSSEVVASFSSAMSTLRNLPLAELRTIAGRLKLAKFSKLRKAVLLEQITERLVN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41550 Rho termination factor (.1) Potri.016G043300
[exp]
0 1
Potri.010G076425
[exp]
2.44 0.8894
AT3G50780 unknown protein Potri.005G129700
[exp]
6.00 0.8842
AT1G68330 unknown protein Potri.008G122300
[exp]
8.12 0.8634
Potri.010G001250
[exp]
8.94 0.8665
AT3G62110 Pectin lyase-like superfamily ... Potri.002G186900
[exp]
10.24 0.8627
AT2G26975 Ctr copper transporter family ... Potri.009G038700
[exp]
10.72 0.8539 Pt-COPT2.1
AT3G60670 PLATZ transcription factor fam... Potri.014G059300
[exp]
13.63 0.8846
Potri.018G101800
[exp]
13.96 0.8404
AT2G44930 Plant protein of unknown funct... Potri.017G019300
[exp]
20.49 0.8828
AT4G12690 Plant protein of unknown funct... Potri.015G084500
[exp]
22.20 0.8477

Potri.016G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.