Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41540 814 / 0 GPDHC1 6-phosphogluconate dehydrogenase family protein (.1.2.3) AT3G07690 745 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT5G40610 75 / 2e-14 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT2G40690 69 / 3e-12 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046900 [exp] 874 / 0 AT2G41540 820 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.003G203800 [exp] 802 / 0 AT3G07690 768 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.013G090900 [exp] 78 / 2e-15 AT2G40690 612 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Potri.017G070900 [exp] 71 / 4e-13 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035438 [exp] 852 / 0 AT2G41540 800 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10031052 [exp] 850 / 0 AT2G41540 803 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10016364 [exp] 771 / 0 AT3G07690 766 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10019761 [exp] 750 / 0 AT3G07690 744 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10014889 [exp] 66 / 1e-11 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10022308 [exp] 65 / 5e-11 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01210 [poplar] [flax] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CL0106 [poplar] [flax] 6PGD_C PF07479 [poplar] [flax] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.016G043400.1 pacid=42808903 polypeptide=Potri.016G043400.1.p locus=Potri.016G043400 ID=Potri.016G043400.1.v4.1 annot-version=v4.1 ATGGTTGGAAGTATTAAGACAATGAATCATCACGGTAATGGATGGTCTGCTCAAAATTGTAATGGCCTAGAAGAGAAGCTTGATGAGCTTCGAAGCCTTC TAGGCAAGACTGATGGTGATCCTCTGAGAATTGTCGGCGTTGGAGCAGGTGCTTGGGGGAGTGTTTTTGCAGCTTTGCTGCAGGATAGTTATGGTCGGTT CCGAGAGAAGGTCCAAATCAGGATATGGAGAAGGCCTGGAAGGGCTGTTGATAGAGTCACAGCAGAGCATCTCTTTGAAGTGATCAATTCGAGGGAGGAT GTATTGAGGAGGTTGATCCGGCGATGTGCATATTTGAAGTACGTTGAGGCCAGGCTAGGCGATCGGACTCTATTTGCTGATGAGATTTTGAAGGATGGAT TTTGCTTGAACATGATTGATGTACCACTTTGTCCTTTGAAGGTTGTGACTAATTTGCAAGAGGCTGTTTGGGATGCTGATATTGTGGTAAATGCTGTGCC TTCCACAGAGACACGCGAGGTGTTTGAAGAGATTAGCCAATATTGGAAGGAGAGAATCACAACACCCATCATCATCTCTTTGGCGAAGGGTATAGAAGCT GCATTAGAACCTGTTCCCCATATAATCACACCTACACAAATGATTAACAGAGCGACTGGAGTACCAACGCAGAATATACTTTATCTTGGTGGACCAAATA TTGCTTCAGAAATATACAACAAGGAATATGCTAATGCTCGAATATGTGGAGCTGATAAGTGGAGAAAGCCTCTGGCTAAATTTCTAAGGCAGCCCCATTT CATTGTGTGGGACAACAGTGACCTTGTCACTCATGAAGTCATGGGTGGCCTGAAGAATGTCTATGCCATTGGAGCTGGGATGGTAGCAGCCCTTACTAAT GAAAGTGCTACCAGCAAGTCAGTCTACTTTGCACATTGTACATCAGAGATGATATTTATTACTCATCTATTGGCTGAAGAACCTGAGAAGCTTGCAGGGC CTTTGCTGGCGGACACATATGTAACCTTGTTAAAGGGTCGTAATGCATGGTATGGCCAAATGTTAGCCAAAGGGGAAATTAGCCGGGATATTGGTGATAA CATCAGTGGGAAAGGAATGATTCAGGGTGTTTCGGCAGTTGGAGCATTCTATGAACTCCTGAGCCAGTCAAGCTTGAGTGTGTTACATCCTGATGAAAAG AAATCTGTTGCACCTGTTGAACTCTGCCCGATCTTGAAAACATTGTATAAAATACTGATAATAAGGGAGCAATCATCACAAGCTATCCTCCAAGCACTAA GGGATGAAACACTGAATGATCCTCGGGAACGCATAGAGATTGCACAAAGCCATGCTTTCTACAGGCCTTCTCTTCTTGGCCAACCTTTGGCTACTTTGCA TTGCCAATAA
AA sequence Show only first row Show all	>Potri.016G043400.1 pacid=42808903 polypeptide=Potri.016G043400.1.p locus=Potri.016G043400 ID=Potri.016G043400.1.v4.1 annot-version=v4.1 MVGSIKTMNHHGNGWSAQNCNGLEEKLDELRSLLGKTDGDPLRIVGVGAGAWGSVFAALLQDSYGRFREKVQIRIWRRPGRAVDRVTAEHLFEVINSRED VLRRLIRRCAYLKYVEARLGDRTLFADEILKDGFCLNMIDVPLCPLKVVTNLQEAVWDADIVVNAVPSTETREVFEEISQYWKERITTPIIISLAKGIEA ALEPVPHIITPTQMINRATGVPTQNILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTN ESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEISRDIGDNISGKGMIQGVSAVGAFYELLSQSSLSVLHPDEK KSVAPVELCPILKTLYKILIIREQSSQAILQALRDETLNDPRERIEIAQSHAFYRPSLLGQPLATLHCQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.016G043400 [exp]	0	1
AT1G02260			Divalent ion symporter (.1)		Potri.015G146900 [exp]	1.00	0.7932
AT1G05440			C-8 sterol isomerases (.1)		Potri.008G154400 [exp]	4.89	0.6787
					Potri.003G015433 [exp]	13.56	0.7183
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Potri.012G130700 [exp]	22.24	0.6170
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.004G084233 [exp]	31.30	0.6580
AT5G38220			alpha/beta-Hydrolases superfam...		Potri.017G117633 [exp]	41.73	0.6002
AT1G23070			Protein of unknown function (D...		Potri.018G062600 [exp]	42.20	0.6607
AT1G30820			CTP synthase family protein (....		Potri.001G073100 [exp]	43.70	0.6671
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.005G237600 [exp]	47.43	0.6696
					Potri.010G072200 [exp]	49.49	0.6388

Compare expression of checked genes

Potri.016G043400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.