Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHR929
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57300 2157 / 0 ATINO80 INO80 ortholog (.1.2) AT3G12810 322 / 4e-89 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT3G06400 269 / 6e-74 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 268 / 2e-73 CHR17 chromatin remodeling factor17 (.1.2) AT5G66750 256 / 1e-71 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT3G06010 256 / 1e-69 ATCHR12 Homeotic gene regulator (.1) AT5G19310 246 / 2e-66 Homeotic gene regulator (.1) AT2G28290 238 / 9e-63 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G46020 229 / 3e-60 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT2G13370 224 / 1e-58 CHR5 chromatin remodeling 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047100 [exp] 2791 / 0 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2) Potri.003G022100 [exp] 320 / 1e-88 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.001G207700 [exp] 319 / 3e-88 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.019G129900 [exp] 269 / 7e-76 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G205600 [exp] 267 / 2e-73 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.007G026700 [exp] 261 / 2e-73 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.010G021400 [exp] 265 / 1e-72 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 261 / 3e-71 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 257 / 6e-70 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031050 [exp] 2298 / 0 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10035436 [exp] 2094 / 0 AT3G57300 1875 / 0.0 INO80 ortholog (.1.2) Lus10002974 [exp] 298 / 1e-81 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10041735 [exp] 262 / 5e-73 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10033967 [exp] 265 / 3e-71 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10034064 [exp] 245 / 6e-66 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 244 / 8e-66 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10024019 [exp] 238 / 4e-65 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10012798 [exp] 234 / 1e-61 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10036371 [exp] 229 / 4e-60 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] P-loop_NTPase PF13892 [poplar] [flax] DBINO DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G043500.1 pacid=42809420 polypeptide=Potri.016G043500.1.p locus=Potri.016G043500 ID=Potri.016G043500.1.v4.1 annot-version=v4.1 ATGGACAACAGGAGACAAGCCAAGGACTCGCTTTCTTACTCCAATTTGTTCAATCTTGAGTCTTTGGTGAACTTCAGAGTTCCACAACCAGATGATGAAT TTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGGTAGCCAAGGTGGAGCAATGTCAAAATTTGTTAATGGGAATCTATCGGAGAGGGAATTGAG TTCAGGGAAGAGAAAGAGGCGGTATAACAACAGTGAGGGAGAGGAGGAAGACGGATATTCGGGGGCACGCATTACTGAGGAACAGTATCGATCAATGTTA GGAGAACATATCCAGAAGTACAAAAGGAGGTATAAGGATTCCTTGTCAAGTCCTGCACCTCCTCCTCGGATGGGGATTCCCGTTCCAAAGAGCAGTTTGG GTGGTTCTAAAACTAGGAAGCTGGGAAGTGAGCAGCGAGGGGGTTTATATGATATGGAAACCACATCTGAATGGGTCAATGACATTGTACCATCAAAACG CGGAGACTATCATGAGCCAGAGTTCACGCCCAAAATATACTATGAACCTCCTTATTTGGATATTGGGGATGGTGTCACTTATAGGATACCCCCCTCTTAT GATAAGCTGGCGGCATCATTGAACTTACCAAGCTTCTCAGATATGCGGGTGGAGGAATTTTACTTGAAGGGCACCTTAGATTTGGGTTCCTTGGCAGCAA TGACAGCCAATGATAAAAGGTTTGGACTTAGAAGCCGAGCGGGAATGGGAGAGCCCCAGTTACAATACGAGTCACTTCAGGGAAGGTTGAAGGCATTGGC AGCTTCTAACTCTGCTGAGAAATTCAGTCTCAAGATATCCGAAGAGGCATTGAATTCCTCAATCCCAGAGGGGGCAGCTGGAAATATAAAACGCTCTATT TTGTCAGAGGGCGGTGTAATGCAGGTTTACTATGTTAAAGTTTTGGAGAAAGGAGACACATATGAGATTATTGAGCGGAGTCTACCTAAGAAGCCAAAAA TAATTAAAGACCCTTCTGTTATTGAGAGGGAGGAAATGGAAAGGATTGGTAAAGTTTGGGTAAACATTGTGAGAAGAGATATACCTAAGCATCATAGGAT TTTCACTACGTTTCATCGGAAGCAACTAATTGATGCAAAGAGGTTCTCAGAAAACTGTCAAAGAGAGGTCAAATTGAAGGTTAGCAGATCACTCAAAATA ATGAAGGGTGCTGCAATTCGCACTAGGAAGTTAGCTAGAGACATGCTACTGTTTTGGAAGCGAGTGGATAAGGAGATGGCAGAGGTGAGGAAAAAGGAGG AAAGAGAAGCTGCAGAAGCTTTGAAGCGTGAACAAGAGCTCAGGGAAGCAAAAAGACAGCAGCAAAGGCTCAATTTTCTCATACAACAAACAGAACTGTT CAGTCATTTCATGTCAAACAAACCAAATTCACAGCCGTCAGAAGCTTTGCCAATTGCAGATGAAAAGACAGATGATCAAGTAATGGATTGTAGCACTGCT GAAGCTGGACCTGATCCTGAAGAAGATCCTGAGGATGCTGAATTGAGAAAAGAGGCTCTCAAAGCTGCTCAAGATGCAGTCTCCAAGCAGAAACTGTTAA CAAGTGCTTTTGATAGTGAGTGTTCAAAGCTGCGTGAAGTTGCTGATATTGAGGGACCTATAACTGATGCCTCAGTTGCAGGATCTAGCAACATTGATTT GCAGACACCCTCCACCATGCCTGTTACATCAACAGTTAAGACACCAGAGTTGTTTAAAGGCAGCCTTAAAGAATATCAGTTGAAGGGTCTTCAGTGGCTG GTTAATTGTTATGAGCAGGGCTTAAATGGTATACTGGCTGATGAGATGGGCCTTGGAAAGACCATTCAAGCCATGGCATTCTTGGCTCATTTGGCTGAGG AAAAAAATATCTGGGGTCCTTTTCTGATTGTTGCTCCTGCTTCTGTCTTGAATAACTGGGCTGATGAAATCAGTCGTTTCTGCCCTGACTTGAAAACCCT TCCATATTGGGGTGGGCTTCAAGAGCGGATGGTACTTCGGAAAAACATTAATCCAAAACGCCTTTATCGAAGGGAGGCTGGTTTTCACATTCTCATTACC AGCTATCAATTGCTAGTGTCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAATATATGGTACTAGATGAGGCCCAGGCTATTAAGAGTGCCAACAGTA TAAGATGGAAGACACTGCTCAGTTTTAATTGTCGTAATCGCCTACTGCTGACTGGTACACCAATTCAGAATAACATGGCAGAATTGTGGGCCCTCCTACA TTTCATCATGCCCACATTATTTGACAGCCACGAACAGTTCAATGAGTGGTTTTCTAAAGGAATTGAGAATCATGCAGAACATGGAGGTACTTTAAATGAG CACCAGCTAAACAGATTGCATGCAATTCTGAAGCCTTTTATGCTGCGACGTGTGAAGAAAGATGTGGTTTCTGAGTTAACTAGGAAAACAGAAGTTACTG TACACTGCAAGTTGAGCTCTCGACAACAAGCTTTCTATCAAGCTATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGCAATCGTGGACATCTTAA TGAGAAGAAAATTATGAATCTCATGAACATAGTCATTCAGCTGAGAAAGGTTTGTAACCATCCAGAGTTGTTTGAAAGGAATGAGGGAATCACATATTTC TATTTTGGAGAGATTCCTAATTCTTTCCTGCCCTCTCCTTTTGGGGAGTTGGAGGACATACATTATTCAGGAGGTCGAAATCCTATTACGTATAAGATTC CAAAAGTAGTCCACAATGAGATTGTCCAAAGTTCTGAGGTACTTTGCTCAGCAATTGGGCGTGGTTTTGGCAGAGAGTCATTTCAAAAGCATTTTAATAT ATTCTCATCAGAAAATGTGTATCGATCTGTATTTGCACTGGACAATAGCTCAGATAGCTTGCTTATTAAGAGTGGGACGTTTGGTTTTTCTCATTTGATG GATTTATCCCCAGCGGAGGTTGCATTTTTGGCAATTAGTTCATTTATGGAGAGGCTGTTGTTTTTTATTATGAGATGGGGCCGGCGATTTTTGGATGGAA TCTTGGACTTGCTCATGAAAGACATAGAAAATGACCATAGCAATTACCTTGAAAAACATAAAGTTAGAGCTGTTACACGGATGTTATTGATGCCATCAAG ATCTGAGACAGATATCCTAAGGAGGAAAATGGCAACAGGCCCTGCTGATACTCCATTTGAAGCTCTAGTTAATTCTCATCAGGACAGGCTTCTGTCCAAC ATCAAACTTCTCCACTCAACTTACACGTTCATCCCACGGACCAGAGCACCACCGATCGGTGGCCAATGCTCAGATAGAAACTTTGCCTACCAAATGATGG AAGAATTACACCAACCCATGGTTAAGAGGTTGTTAACTGGGTTTGCACGCACATCCACATTTAATGGACCTAGAAAGCCAGAGCCTCTTCATCCTTTGAT TCAGGAGATTGATTCTGAACTACCTGTTTCACAACCTGCCCTTCAGTTGACATACAAGATTTTTGGTTCTTGTCCCCCCATGCAGAGCTTTGACCCTGCA AAGTTGCTCACGGATTCTGGAAAGCTTCAAACACTTGATATATTACTGAAACGATTGCGAGCAGAAAACCACCGAGTTCTATTGTTTGCTCAAATGACAA AAATGCTGAATATTCTCGAGGACTACATGAATTATAGGAAATATAGATATCTTAGACTTGATGGATCTTCCACCATTATGGATCGTCGGGACATGGTCAG AGACTTCCAGCTTAGGAATGATATTTTTGTTTTCTTGCTAAGTACCAGAGCTGGTGGGTTGGGTATTAATTTGACAGCTGCAGACACTGTTATCTTTTAT GAAAGCGATTGGAATCCTACACTAGATTTACAGGCAATGGATAGAGCACATCGGCTGGGCCAGACGAAGGATGTCACTGTCTACCGGCTCATTTGTAAAG AGACAGTTGAGGAAAAGATTTTACAAAGAGCAAGTCAGAAAAATACTGTGCAGCAGCTTGTTATGACAGGTGGTCATGTTCAGGATGATCTCTTGGCTCC TGAGGATGTGGTGTCCTTGCTTCTGGATGATGCCCAGCTGGAGCAGAAGTTGAGAGAAATTCCACTGCAGGCCAGGGATAGACAAAAGAAAAAACCAACG AAGGCAATAAGGGTAGATGCTGAAGGGGATGCAACTTTCGAAGATTTGACAGAAACTGTTGCTCAGGGCACGGGAAATGAACAATCCGAGGATGCAGAGA AATTGAAATCACCCAATAGCAATAAGAGGAAAGCTGCTTCTGACAAGCAGATTACATCAAAGCCAAGGAATTCACAGAAGAATGAACCAAATTCTTCACC GATGGACTATGAACTGGATGATCCTTTTCCAAATTCTGAGCCACAGTCACAGAGACCCAAGCGGTTGAAGAGGCCAAAGAAGAGTGTAAATGAGAAACTC GAACCAGCATTTACTGCCACACCCTCAATCGATTCATCACAGATCCAATATCCACCTACAAATAATCTTGCTTCAACATATTCTAACACTTGA
AA sequence Show only first row Show all	>Potri.016G043500.1 pacid=42809420 polypeptide=Potri.016G043500.1.p locus=Potri.016G043500 ID=Potri.016G043500.1.v4.1 annot-version=v4.1 MDNRRQAKDSLSYSNLFNLESLVNFRVPQPDDEFDYYGNSSQDESRGSQGGAMSKFVNGNLSERELSSGKRKRRYNNSEGEEEDGYSGARITEEQYRSML GEHIQKYKRRYKDSLSSPAPPPRMGIPVPKSSLGGSKTRKLGSEQRGGLYDMETTSEWVNDIVPSKRGDYHEPEFTPKIYYEPPYLDIGDGVTYRIPPSY DKLAASLNLPSFSDMRVEEFYLKGTLDLGSLAAMTANDKRFGLRSRAGMGEPQLQYESLQGRLKALAASNSAEKFSLKISEEALNSSIPEGAAGNIKRSI LSEGGVMQVYYVKVLEKGDTYEIIERSLPKKPKIIKDPSVIEREEMERIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDAKRFSENCQREVKLKVSRSLKI MKGAAIRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALKREQELREAKRQQQRLNFLIQQTELFSHFMSNKPNSQPSEALPIADEKTDDQVMDCSTA EAGPDPEEDPEDAELRKEALKAAQDAVSKQKLLTSAFDSECSKLREVADIEGPITDASVAGSSNIDLQTPSTMPVTSTVKTPELFKGSLKEYQLKGLQWL VNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMVLRKNINPKRLYRREAGFHILIT SYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNE HQLNRLHAILKPFMLRRVKKDVVSELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGHLNEKKIMNLMNIVIQLRKVCNHPELFERNEGITYF YFGEIPNSFLPSPFGELEDIHYSGGRNPITYKIPKVVHNEIVQSSEVLCSAIGRGFGRESFQKHFNIFSSENVYRSVFALDNSSDSLLIKSGTFGFSHLM DLSPAEVAFLAISSFMERLLFFIMRWGRRFLDGILDLLMKDIENDHSNYLEKHKVRAVTRMLLMPSRSETDILRRKMATGPADTPFEALVNSHQDRLLSN IKLLHSTYTFIPRTRAPPIGGQCSDRNFAYQMMEELHQPMVKRLLTGFARTSTFNGPRKPEPLHPLIQEIDSELPVSQPALQLTYKIFGSCPPMQSFDPA KLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFY ESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQDDLLAPEDVVSLLLDDAQLEQKLREIPLQARDRQKKKPT KAIRVDAEGDATFEDLTETVAQGTGNEQSEDAEKLKSPNSNKRKAASDKQITSKPRNSQKNEPNSSPMDYELDDPFPNSEPQSQRPKRLKRPKKSVNEKL EPAFTATPSIDSSQIQYPPTNNLASTYSNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.016G043500 [exp]	0	1	CHR929
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	1.41	0.9265
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	2.00	0.9229
AT4G31880			unknown protein		Potri.006G263300 [exp]	3.87	0.9027
AT1G15780			unknown protein		Potri.003G012400 [exp]	6.63	0.9000
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	6.70	0.8975
AT3G26730			RING/U-box superfamily protein...		Potri.014G145300 [exp]	6.92	0.8951
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	10.58	0.8942	HAC901,Pt-HAC1.4
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	12.00	0.8830
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.008G114900 [exp]	12.96	0.8548
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	12.96	0.8910

Compare expression of checked genes

Potri.016G043500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.