Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT5G04170 303 / 3e-102 Calcium-binding EF-hand family protein (.1) AT2G27480 150 / 5e-44 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047300 [exp] 325 / 6e-112 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.004G202200 [exp] 184 / 4e-57 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.009G163600 [exp] 183 / 1e-56 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1) Potri.016G117200 [exp] 45 / 3e-05 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.010G080900 [exp] 44 / 4e-05 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.017G029700 [exp] 41 / 0.0006 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035435 [exp] 315 / 2e-107 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10042037 [exp] 310 / 4e-105 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10018041 [exp] 308 / 8e-104 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10031049 [exp] 273 / 7e-93 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10043389 [exp] 192 / 2e-60 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1) Lus10019545 [exp] 189 / 3e-59 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1) Lus10042370 [exp] 46 / 3e-05 AT3G57530 820 / 0.0 calcium-dependent protein kinase 32 (.1) Lus10039391 [exp] 42 / 0.0001 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10026300 [exp] 42 / 0.0001 AT5G12480 252 / 4e-83 calmodulin-domain protein kinase 7 (.1.2) Lus10004807 [exp] 42 / 0.0005 AT3G51850 986 / 0.0 calcium-dependent protein kinase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand CL0220 [poplar] [flax] EF_hand PF13405 [poplar] [flax] EF-hand_6 EF-hand domain
Representative CDS sequence Show only first row Show all	>Potri.016G043600.1 pacid=42810335 polypeptide=Potri.016G043600.1.p locus=Potri.016G043600 ID=Potri.016G043600.1.v4.1 annot-version=v4.1 ATGTCAGGCTACCCTCAACAACCAGCTGGCTACGGCTACGGCCAGGGTCCACCGCCACCACAACAATCCCAACCCTACGGTTCTGCACAGCCATACTCCT CCGCTTACGGCGCACCACCACAACCTTCTGCTCCATACGGCACCGCACCACAACCTACTGCTCCATACGGCAGCGCACAACATGCTGCCCCATACGGCAC CGCACAACAAGCTGCTCCATACGGCAGCTCACAACATGCTGCTCCATACGGCACAGCGCAAGCTTATGGCTCCCCCTACGCAGCTCCCCCTCCCGGCACC AAGCCACCAAAGGACAAACCCCAAGGTTCCACACCTGGCGGCTATCCTCCTGCTCCCTACGGAAGCAGCCCCTTTGCTGCTCTCTTGCCCTCCACCTTCC CTCCAGGCACCGACCCCAGCATCGTCGCCTGCTTTCAAGTCGCCGATCAGGACGGTAGCGGGATAATTGATGACAAAGAACTGCAGAGAGCCTTATCGGG CTATAATCAGAGCTTCAGCTTGAGGACTGTTCACCTTCTCATGTATCTATTCACAAACAGCAACGCCAGGAAGATCGGACCTAAGGAATTCACTGAGCTG TTTTACAGCTTGCAGAACTGGAGGGCAATCTTTGAGAGATTTGATAGGGACAGGAGTGGGAGGATTGATATTAATGAGCTGAGAGAGGCACTTCTGAGTT TAGGATTTTCCGTCTCACCTGTTGTTTTGGATTTGTTGGTATCTAAGTTTGATAAAACTGGAGGAAAGAACAAGGCCATTGAATACGACAATTTCATCGA ATGCTGTCTGACTGTCAAGGGACTGACTGAGAAGTTCAAAGAGAGGGATACTGCATACTCTGGTTCAGCAAGTTTTACTTACGAGAATTTCATGCTAGCT GTTCTTCCATTCCTCATTGCATAG
AA sequence Show only first row Show all	>Potri.016G043600.1 pacid=42810335 polypeptide=Potri.016G043600.1.p locus=Potri.016G043600 ID=Potri.016G043600.1.v4.1 annot-version=v4.1 MSGYPQQPAGYGYGQGPPPPQQSQPYGSAQPYSSAYGAPPQPSAPYGTAPQPTAPYGSAQHAAPYGTAQQAAPYGSSQHAAPYGTAQAYGSPYAAPPPGT KPPKDKPQGSTPGGYPPAPYGSSPFAALLPSTFPPGTDPSIVACFQVADQDGSGIIDDKELQRALSGYNQSFSLRTVHLLMYLFTNSNARKIGPKEFTEL FYSLQNWRAIFERFDRDRSGRIDINELREALLSLGFSVSPVVLDLLVSKFDKTGGKNKAIEYDNFIECCLTVKGLTEKFKERDTAYSGSASFTYENFMLA VLPFLIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10300			Calcium-binding EF-hand family...		Potri.016G043600 [exp]	0	1
AT4G34150			Calcium-dependent lipid-bindin...		Potri.001G301900 [exp]	1.41	0.8977
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032800 [exp]	4.12	0.8562
AT5G64880			unknown protein		Potri.005G083900 [exp]	6.24	0.8597
AT3G14470			NB-ARC domain-containing disea...		Potri.003G015500 [exp]	6.32	0.8460
					Potri.011G107500 [exp]	7.61	0.8339
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.005G032300 [exp]	8.71	0.8461
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143433 [exp]	10.00	0.8919
AT4G17350			Plant protein of unknown funct...		Potri.003G077900 [exp]	10.95	0.8328
AT5G22460			alpha/beta-Hydrolases superfam...		Potri.004G203700 [exp]	11.22	0.8443
AT1G55340			Protein of unknown function (D...		Potri.006G233100 [exp]	11.74	0.8196

Compare expression of checked genes

Potri.016G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.