Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20990 306 / 4e-105 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08080 277 / 2e-93 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT1G08065 250 / 8e-83 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT4G21000 244 / 2e-80 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT2G28210 230 / 8e-76 ATACA2 alpha carbonic anhydrase 2 (.1) AT5G04180 216 / 2e-69 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT3G52720 182 / 5e-56 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT5G56330 176 / 6e-53 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047400 [exp] 429 / 4e-153 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 291 / 6e-99 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.009G010200 [exp] 288 / 8e-98 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 281 / 3e-95 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G121900 [exp] 271 / 4e-91 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G212900 [exp] 191 / 2e-59 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.016G079600 [exp] 186 / 8e-58 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042030 [exp] 376 / 2e-131 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018034 [exp] 325 / 9e-112 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021455 [exp] 286 / 4e-97 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 276 / 4e-93 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 275 / 3e-92 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018017 [exp] 273 / 8e-91 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10014412 [exp] 270 / 2e-90 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10023915 [exp] 270 / 4e-90 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042013 [exp] 266 / 1e-88 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10031027 [exp] 253 / 4e-84 AT4G20990 235 / 2e-77 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [poplar] [flax] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Potri.016G043700.1 pacid=42808904 polypeptide=Potri.016G043700.1.p locus=Potri.016G043700 ID=Potri.016G043700.1.v4.1 annot-version=v4.1 ATGACTAGCACCAGTAACTTCAATGTCTACAACATCAACATGATGAGCTTTCTCCTTCTTGTTTCTCTCATCATTGTCTCATATTCACTCGCCATCTCCT TGGCGCTCGAGTCCGAAGTTGAGGATGAAACTCAATTTACATATGAAGAAGGAACTGAAGAAGGGCCAAAGAACTGGGGAAAGATTAATCCACATTGGGA AGCTTGTGGTAAAGGAAAAATGCAGTCTCCTATTGATGTTCTTGACAGAAGGGTGGAAGTTTTTCCGAATTTAGGAAAGTTGCGTAGGGATTACCAAGCA GCTCCTGCAGCTGTGAAGAATAGGGGACATGACATTACAGTGATTTGGAAAGGAGATGCAGGAAAAATTACAATTAATGATACTGATTACCAACTGCAGC AATGTCATTGGCATTCACCCTCAGAGCATACATTCAATGGTTCAAGGCATGACCTGGAGCTTCATCTAGTTCACTATAGCTCTCAGGGAGGGATAGCTGT TGTTGCAATTGTTTACAAATATGGTCGGCCTGATCGCTTCCTTTCAAAGTTGCTCCGCCATATAAACCATGTTGACCATAGAGAGAGAGAGATGGGGATT GTCAACCCAGGAGATATCAAATTTGGGAGCAGAAAGTATTACAGATATGTCGGTTCTCTCACAGTTCCTCCATGCACTGAAGGTGTTGTTTGGACAATAG TCATGAAGGTCAGGACAGTTTCAAGGGAGCAAGTTAAAGCATTAAGAGATGCTGTTCATGATGGATTCGAGGCAAATGCAAGACCAACTCAGCCATCGAC TGGAATTCCAATGTACGAGTACCGTCCAAGACAGAATGGGGCCTCTACCTAG
AA sequence Show only first row Show all	>Potri.016G043700.1 pacid=42808904 polypeptide=Potri.016G043700.1.p locus=Potri.016G043700 ID=Potri.016G043700.1.v4.1 annot-version=v4.1 MTSTSNFNVYNINMMSFLLLVSLIIVSYSLAISLALESEVEDETQFTYEEGTEEGPKNWGKINPHWEACGKGKMQSPIDVLDRRVEVFPNLGKLRRDYQA APAAVKNRGHDITVIWKGDAGKITINDTDYQLQQCHWHSPSEHTFNGSRHDLELHLVHYSSQGGIAVVAIVYKYGRPDRFLSKLLRHINHVDHREREMGI VNPGDIKFGSRKYYRYVGSLTVPPCTEGVVWTIVMKVRTVSREQVKALRDAVHDGFEANARPTQPSTGIPMYEYRPRQNGAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Potri.016G043700 [exp]	0	1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.010G043500 [exp]	2.64	0.8729
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.005G243000 [exp]	2.82	0.8686	SSTP.3
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.009G091000 [exp]	9.32	0.7642
AT5G59020			Protein of unknown function (D...		Potri.001G246200 [exp]	10.00	0.7542
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.012G100700 [exp]	10.29	0.7954
AT5G27930			Protein phosphatase 2C family ...		Potri.005G021900 [exp]	11.40	0.7863
					Potri.016G098300 [exp]	11.66	0.8698
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.007G016700 [exp]	12.04	0.8256
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014405 [exp]	13.56	0.8326
AT3G43630			Vacuolar iron transporter (VIT...		Potri.002G069400 [exp]	13.78	0.8664

Compare expression of checked genes

Potri.016G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.