Plant FIBer expression Database

EIF3.3 (Potri.016G043800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol EIF3.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57290 787 / 0 ATINT6, ATEIF3E-1, TIF3E1, INT-6, EIF3E eukaryotic translation initiation factor 3E (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G047600
[exp]
854 / 0 AT3G57290 800 / 0.0 eukaryotic translation initiation factor 3E (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042031
[exp]
807 / 0 AT3G57290 804 / 0.0 eukaryotic translation initiation factor 3E (.1)
Lus10018035
[exp]
806 / 0 AT3G57290 806 / 0.0 eukaryotic translation initiation factor 3E (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01399 PCI PCI domain
CL0123 PF09440 eIF3_N eIF3 subunit 6 N terminal domain
Representative CDS sequence
>Potri.016G043800.1 pacid=42809881 polypeptide=Potri.016G043800.1.p locus=Potri.016G043800 ID=Potri.016G043800.1.v4.1 annot-version=v4.1
ATGGCGACTTACGATCTGACACCACGAATTGCACCAAATCTGGACCGCCACTTAGTATTTCCTCTGCTAGAATTCCTTCAAGAAAGTCAGCTTTACCCAG
ATGAGCAGATCTTAAAAGCCAAAATCGAGCTGTTGAACAAAACAAACATGGTTGATTACGCTATGGACATCCACAAGAGTCTTTACCGCACCGAAGAAGT
GCCTCAAGACATGATTGATAGGAGGGCAGAGGTAGTGGCTAGATTGAAGGCATTGGAGGAGGCTGCTGCACCCCTGGTAGAATTCTTGCAGAATGCGAGT
GCTATGCAGGAGTTGAGGGCTGATAAGCAGTATAATCTTCAGATGCTTCATGAACGTTATCAGATTGGTCAGGAGCAGATTGAGGCATTGTATCAGTATG
CCAAATTCCAATTTGAATGTGGAAACTACTCTGGTGCTGCTGACTATCTGTATCAGTACAGGGGCTTATGCAATAACAGTGAAAGGAGTTTGAGTGCTTT
GTGGGGAAAGATGGCAGCTGAGATACTGATGCAAAACTGGGATATTGCTCTTGAAGAACTTAACCGGTTGAAAGAAATTATTGACTCAAAGAGCTTCTCA
TCGCCTTTGAATCAGGTGCAAAGTAGAATATGGTTGATGCATTGGAGTCTCTTCATCTTTTTCAACAATGACAACGGAAGAACACAGATTATTGACTTGT
TTAACCAGGACAAGTATCTCAATGCCATTCAAACCAATGCACCCCATCTTTTGCGTTACCTAGCAACTGCATTCATTGTCAACAAAAGAAGACGACCTCA
ATTCAAGGATTTTATAAAGGTTATCCAGCAAGAGCAGCACTCTTACAAAGATCCTATCACAGAGTTTTTGGCATGTGTCTATGTTAATTATGATTTTGAT
GAGGCACAAAAGAAGATGAAGGAGTGCGAAGAAGTGATACTAAATGATCCTTTCCTTGGCAAACGTCTAGAAGATGGCAACTTTTCCAATGTGCTGTTGA
GAGATGAGTTCCTTGAAAATGCCCGTCTATTTATCTTTGAAACCTATTGCCGGATACATCAGCGTATTGACATAGGAGTCCTTGCAGAGAAATTGAACTT
GAATTTTGAGGAGGCTGAGAGATGGATTGTGAATCTCATCCGTAACTCCAAGCTTGATGCTAAGATTGATTCAGAATCAGGAACTGTTATTATGGAGCCC
AACCATCCCAATGTGTATGAGCAGTTGATAGATCACACCAAGGCATTATCAGGCCGTACTTCCAAGTCAGTCAGTCAGATTCTGGAGCATGCACATGCAC
AGGCTGCTCGATAG
AA sequence
>Potri.016G043800.1 pacid=42809881 polypeptide=Potri.016G043800.1.p locus=Potri.016G043800 ID=Potri.016G043800.1.v4.1 annot-version=v4.1
MATYDLTPRIAPNLDRHLVFPLLEFLQESQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYRTEEVPQDMIDRRAEVVARLKALEEAAAPLVEFLQNAS
AMQELRADKQYNLQMLHERYQIGQEQIEALYQYAKFQFECGNYSGAADYLYQYRGLCNNSERSLSALWGKMAAEILMQNWDIALEELNRLKEIIDSKSFS
SPLNQVQSRIWLMHWSLFIFFNNDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFD
EAQKKMKECEEVILNDPFLGKRLEDGNFSNVLLRDEFLENARLFIFETYCRIHQRIDIGVLAEKLNLNFEEAERWIVNLIRNSKLDAKIDSESGTVIMEP
NHPNVYEQLIDHTKALSGRTSKSVSQILEHAHAQAAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57290 ATINT6, ATEIF3E... eukaryotic translation initiat... Potri.016G043800
[exp]
0 1 EIF3.3
AT4G32720 ATLA1 La protein 1 (.1.2) Potri.018G037900
[exp]
2.23 0.7578
AT1G60770 Tetratricopeptide repeat (TPR)... Potri.006G157400
[exp]
3.00 0.7982
AT2G34570 MEE21 maternal effect embryo arrest ... Potri.004G197200
[exp]
5.83 0.7725
AT1G67320 EMB2813 EMBRYO DEFECTIVE 2813, DNA pri... Potri.003G169300
[exp]
8.24 0.7606
AT2G21060 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, g... Potri.009G132000
[exp]
9.16 0.7553
AT5G57230 Thioredoxin superfamily protei... Potri.006G076300
[exp]
16.73 0.7240
AT2G34480 Ribosomal protein L18ae/LX fam... Potri.004G063400
[exp]
17.54 0.7368
AT2G21060 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, g... Potri.004G172600
[exp]
19.74 0.7379 Pt-GRP2.3
AT5G06620 SDG38, ATXR4 SET domain protein 38 (.1) Potri.006G196566
[exp]
24.49 0.7637
AT4G29910 EMB2798, ORC5, ... EMBRYO DEFECTIVE 2798, origin ... Potri.014G085900
[exp]
28.77 0.7355

Potri.016G043800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.