Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41520 613 / 0 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT5G12430 592 / 0 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT4G02100 99 / 8e-21 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT3G62570 87 / 3e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G58620 84 / 4e-16 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G53300 83 / 1e-15 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT5G65160 82 / 1e-15 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G78120 81 / 3e-15 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G47440 79 / 1e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G10090 79 / 2e-14 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047700 [exp] 1901 / 0 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.009G050200 [exp] 646 / 0 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 632 / 0 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.005G076800 [exp] 94 / 4e-19 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 91 / 3e-18 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G166300 [exp] 88 / 3e-17 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 87 / 3e-17 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 87 / 5e-17 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.002G197300 [exp] 85 / 2e-16 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035427 [exp] 788 / 0 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10031042 [exp] 667 / 0 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10005022 [exp] 601 / 0 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10019041 [exp] 594 / 0 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10031041 [exp] 140 / 5e-38 AT2G41520 128 / 5e-35 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10028154 [exp] 90 / 1e-17 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 89 / 2e-17 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10002438 [exp] 76 / 2e-13 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10036335 [exp] 73 / 9e-13 AT4G02100 645 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10010272 [exp] 67 / 1e-10 AT4G02100 702 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.016G043900.1 pacid=42810073 polypeptide=Potri.016G043900.1.p locus=Potri.016G043900 ID=Potri.016G043900.1.v4.1 annot-version=v4.1 ATGTCACCGGCTGCTGCCGTCGATATCAGGTCACCGGTTACCTCCAAACACCCTTCCTCTCTCCAAAACCCTAACCCCACTCCAATTCAGAATAACCACC GCCAAACTGTAAATGCTACGTTTTATGGTAACACCAGCGAAATCGATATGAATAAAAACGGGTCGCATACCGGGACGGGACGGGCGAGGCCGAGGCTGAT GAAGGTGAGGAAGCAGTTACATGGGAAGAACAGAGGAGAGGGTCCGGGTGAGTCCGGTTCCGGGTCGGATTTTAACCCGTTTAAGTCAGTAGGTGATGAT TTAGATGGGAATAGTTGTGTGTCCAATGTGGGTTTTGTGTTTGGCGCAAATGGGGGTGTAAAAAGTGGGGATTTTGATCAGGGTTTGAATTCTAGAGTGG AATTAGATTCTAAAGAAACAGGATTTGGTGGAAATGTGGGGCAGTGGAGTGAAAAGGAGCCAGCTTTGGGTTTGAAAGTGGAGCCTACGGAGCTTTGTAA TATGGGTTTTGTGTTTGATGCTAATGGGAACGGTGTTGGGGTGAAATCTGATGTGGAGAATAGAGAATTGAATGAGTGTGTTGTGAATGTAGGCGGAGTA GAGATTGAAAAGGCCAGTTATGCGGGTGACAGTGAGTTTTGTGATGACAAAAGTGAATTAAGATCGAGTTTGAATTCCAATAAGGGAGATTCTAGTGGGA ATGGGGTGAAGTTGGGTTCTGATGATGTTGGTTTTGTGTTTGGTGCTGCTCGTGAGGCTTTCAGTACAAATGTGGGGGCTTCTGGTTCTAGTTTTGTATT TCGTGCTAATGCTGATGATTCCATTGCAAATGTTGAGGTTTCTGGTTCTGGTTTTGTATTCAGTGCTGATACTAATGATTCTAGTGCAAATGTGGGGGTT TCTGGTTCAGGGTTTGTGTTTGGTGCAAGTTGGTTTGATAAGAAGTTAAATTCCAACGAGGGAAAGCGAGAATCTGGTGAAAGTTCTGGAAATTCAGTCT TTTCTGATACAGGGAAGATGATTAAATTCAAGAATGAGGCCGAGCTTCATGAAGTGGAAGGTAATAGTAATGGCGTTTTTGTGTTTGGTAGTAGCAGCAA GAAAAGTTGCAATCTTAATGAATGTGTGGTTACGAACTTCCCTGTTGAGGTCAAGTCAAGTGGCGGAACTTTTTTAAACTACAGCATTTCAAAGGATCAA AATGGTAATCTGGATTCTAGTGTCAATGGTAAGGGTACGTTTGCATCATTTCCAAATAGTAGTAATGCAGCTAGTACATCTAGCATTAACCCAATATTTA ATCTTCCAGAAGAGATTAAGAAACTTAATATTAATGAGTTCAAGAATGTTCATGGAGCCGACAATGAGAATTCATCTGCAAATGATGATTCTTTATTTGT TATCAGAAGCAGTAAAAAGGCTTCTGCCTCTTCTAATGGAAGTTCAGATACTTGTTCTCCTGAACAGAATGCTGCTGTGGGTTCGGGTGGTGATAAATTT GAATCCAGTGACAAGAATAGAAGTTGCAATACCGGTAGTACTTCTATCAGAACTTCGAGTTCAGAATTATTTAGGTTTCAGGCAGGATGTGTGAAGACTT CTTTTGAGGGCCAATTATCTGAAGATCGAATGAATGATGATACAAAACTCAATGGAGCTGCTCCTCTAACTTCATTCTCGTTGGCGGGTTTTGATTCCCA AGTACATAGTGAAGTTTCTGAAGCAACAACTATGGCTGGAGTTGAAAGGGAAAATAACAAAAGTAGTTCTACAAGTGATCTGGGTGGATTAGGCATGCCC TTTACAGACTTCAAAACACCATGTGATCCTTTTTGTTTAAAAACAAGTGTATTTCCAGAATCAAATAAGAAACCAGAATTTACTGTAAATAACCGATCAA AGAAGGGCAAAAGATTAGAAATGAGGGTAAAGTTGAAGCAAGATTCTTTACGTAAGCAACACCCAGAGCAAGTTCATGTGCAAAATGAAAGGTGTGGCCA AGAAAATCTAAATTCTCCCGGATGCTACTCACCCATGGATTTTTCTCCTTATCAGGAAACTGCAGCAGCGGGGAAATTTTCTGAAGAAACTTCTGTGACA TTAAATGATTCCAACCCCCAAGAAAATAATTGTGCACCCTCAATGTTGCATTCAACAGCGACAACTGGTCTCAGAGAGGTTGAAGGATTAGATGTTAAGA AAGATGATGGGAGGCCAAGAGAGAAGATGAATCAGGAGAGTTCTGGTTGTGGTTCTGAAAGATGTTTCATGGGTGATTGTATCTCTAAAGGGTTTGTTTT TGGTGCTGAAATGTCCTGCCCTGGTTTCAACTTTGAGCAGGTGAGTAGCAGCAATGATGGTGCAGCTTCCGCTGAAGTTACGCATGGTTTAAAGACAGAA AGCAGCCATCAAATGCAATTTTCCTTTGCTTCAGGTTTGGAAGATGTAGATGAGAGAAAATTTTCCTTTTCTGCTTCATCCTGCTCATCAACACCAAAAC GGCAGTATAGAAAGAAATATAGGAGGAAACCTCCATGCGAACCATTTATTTTTGTCCCAAACCCAAATGGTCAAGGAGAAGATTTATCTACTCGACAGAA AAAGGTGGGGAATAAATCTGAAATAAATGAATTGGCGAAGCAAGGTTCAATCTCATCCACTCGCTCTGTTCAGGAAGAATGTGAGATGTGGCGAGCAAGG GGAAATCATGCTTATCAAAATGGGGATATGTCGAAGGCAGAGGATTTTTATACATGTGGGATAAATTCCATTCCTTCTAGTGATATTTCAGGATGCTGTC TTAAGCCTCTTGTTATTTGCTATAGCAACCGTGCTGCAACGCGGATGTCTCTTGGAAACATGAGGGAGGCGATAAGAGATTGCATAAAGGCTGCTGACCT AGACCCTAACTTTTTCAAAGTTCAAATAAGAGCTGCTAATTGTCATCTTCAGCTGGGAGAAGTTGAGGATGCACTTCACTATTTTAATAAGTGCTTGGAA TCTAGAGTTGGTGTGTGTTTGGATCGAAGAATCACAATAGAAGCTGCTGATGGCGTACAGAAAGCTCAGAAAGTGGTAGAGTGCACAAACCATTCTGCAA AACTTTTGGAAGAGAGAACATATGATGCAGCACTTAATGCTCTAGATGTGATTGCCGAGGCCTTATCTATTAGCCCCTACTCAGAAAGACTACTGGAAAT GAAAGCGAAGTTTCTGTTTATGTTGCGGAAGTATAAAGAGGTGATTCAGATGTGTGAGCAGACTCTTGGTGCTGCTGAAAAGAATTTTGTTTCAATAGGT GTGGATGGGCAGTTTGTAGATATTGGCTGTTCTGAAAGTGAAAATTGCTCATTCGCAAGGGTGTGGAGATGGCACTTAATTTCAAAGTCCTACTTTTATT TGGGAAAGCTTGAGGTGGCTCTTGATTTACTTCAGAAATTAGAGCAAATGGGATCCATCAGTTGCAAGAAAGCAGATGCAAGTAAGATATTGGAATCATC TGTTACATTAGCTGTCACCATACGTGATCTTTTACGTCATAAGAGTGCAGGAAATGAAGCAGTTCAATCAGCACGGTACACTGAAGCAGTAGAACATTAT ACTGGTGCTTTATTAAACAGTATTGAATCCCGCCCTTTTGCAGCAATTTGTTTTGGAAACCGTGCTGCTGCACACCAAGCACTGGGGCAGATTGCTGATG CCATTTCTGATTGCAGCCTAGCTGTGGCACTTGATGGAAATTACTCAAAGGCAGTTGCCAGAAGAGCTGCTTTGCATGAGAGGATTAGAGACTATAGACA GGCGGCTAGTGACCTTCATAGGCTTATTTCTATTCTTGAAAATCAATCCGATGGAAAAGTCAGACAGTCCAGTAAACCTGCTAGATCCACCAGCTGGACA AAAGCATTAAGGCAAGCTCGTCAGCGTTTGTCCTTAATGGAAGAAGAGGCTAAGAAAGGAATCCATTTGGATTTATATTGTATTTTGGGAGTCAAGGATT CTGAGACAGCATCTGATATAAAAAAGGCATACCATAAAGCAGCACTTAAACATCACCCGGACAAGGCTGGTCAGTTCCTGGCAAGAAGTGAAAGTGGAGA TGATGGGCGGCTCTGGAAAGAAATTGTCCAGGAGGTTCACGCAGATGCTGACAGGCTATTTAAGATGATTGGAGAAGCATACGCAGTACTCTCTGACCCC ACTAAGCGTTCGGAATATGATCTTGACGAGCAAATTAGAAGAGCATCAAAGGAAAGCAACGGAAGCAGTCCTCATGGAAGAACATCATACACACGTGGCA ATTCAAATGAGAGAAATGAGTACCGGCGAAATTGGCAGGATAATTGGAAGACTTATGGTTATTGGAAGACTTATGGTTATTCAAGTTCACGCTGGTAG
AA sequence Show only first row Show all	>Potri.016G043900.1 pacid=42810073 polypeptide=Potri.016G043900.1.p locus=Potri.016G043900 ID=Potri.016G043900.1.v4.1 annot-version=v4.1 MSPAAAVDIRSPVTSKHPSSLQNPNPTPIQNNHRQTVNATFYGNTSEIDMNKNGSHTGTGRARPRLMKVRKQLHGKNRGEGPGESGSGSDFNPFKSVGDD LDGNSCVSNVGFVFGANGGVKSGDFDQGLNSRVELDSKETGFGGNVGQWSEKEPALGLKVEPTELCNMGFVFDANGNGVGVKSDVENRELNECVVNVGGV EIEKASYAGDSEFCDDKSELRSSLNSNKGDSSGNGVKLGSDDVGFVFGAAREAFSTNVGASGSSFVFRANADDSIANVEVSGSGFVFSADTNDSSANVGV SGSGFVFGASWFDKKLNSNEGKRESGESSGNSVFSDTGKMIKFKNEAELHEVEGNSNGVFVFGSSSKKSCNLNECVVTNFPVEVKSSGGTFLNYSISKDQ NGNLDSSVNGKGTFASFPNSSNAASTSSINPIFNLPEEIKKLNINEFKNVHGADNENSSANDDSLFVIRSSKKASASSNGSSDTCSPEQNAAVGSGGDKF ESSDKNRSCNTGSTSIRTSSSELFRFQAGCVKTSFEGQLSEDRMNDDTKLNGAAPLTSFSLAGFDSQVHSEVSEATTMAGVERENNKSSSTSDLGGLGMP FTDFKTPCDPFCLKTSVFPESNKKPEFTVNNRSKKGKRLEMRVKLKQDSLRKQHPEQVHVQNERCGQENLNSPGCYSPMDFSPYQETAAAGKFSEETSVT LNDSNPQENNCAPSMLHSTATTGLREVEGLDVKKDDGRPREKMNQESSGCGSERCFMGDCISKGFVFGAEMSCPGFNFEQVSSSNDGAASAEVTHGLKTE SSHQMQFSFASGLEDVDERKFSFSASSCSSTPKRQYRKKYRRKPPCEPFIFVPNPNGQGEDLSTRQKKVGNKSEINELAKQGSISSTRSVQEECEMWRAR GNHAYQNGDMSKAEDFYTCGINSIPSSDISGCCLKPLVICYSNRAATRMSLGNMREAIRDCIKAADLDPNFFKVQIRAANCHLQLGEVEDALHYFNKCLE SRVGVCLDRRITIEAADGVQKAQKVVECTNHSAKLLEERTYDAALNALDVIAEALSISPYSERLLEMKAKFLFMLRKYKEVIQMCEQTLGAAEKNFVSIG VDGQFVDIGCSESENCSFARVWRWHLISKSYFYLGKLEVALDLLQKLEQMGSISCKKADASKILESSVTLAVTIRDLLRHKSAGNEAVQSARYTEAVEHY TGALLNSIESRPFAAICFGNRAAAHQALGQIADAISDCSLAVALDGNYSKAVARRAALHERIRDYRQAASDLHRLISILENQSDGKVRQSSKPARSTSWT KALRQARQRLSLMEEEAKKGIHLDLYCILGVKDSETASDIKKAYHKAALKHHPDKAGQFLARSESGDDGRLWKEIVQEVHADADRLFKMIGEAYAVLSDP TKRSEYDLDEQIRRASKESNGSSPHGRTSYTRGNSNERNEYRRNWQDNWKTYGYWKTYGYSSSRW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.016G043900 [exp]	0	1
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.002G137100 [exp]	7.14	0.8059
AT2G47020			Peptide chain release factor 1...		Potri.014G114000 [exp]	9.38	0.7654
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	9.48	0.7812
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.004G066600 [exp]	10.67	0.7596
AT2G19390			unknown protein		Potri.018G056400 [exp]	17.88	0.7519
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	18.46	0.7446
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	19.07	0.7416	Pt-UBP12.1
AT4G36980			unknown protein		Potri.005G138200 [exp]	21.97	0.7666
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	22.44	0.7506
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	23.87	0.7462

Compare expression of checked genes

Potri.016G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.